Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00418 ATGAACTCTACTCCATCATCTTCTTCCTCCAAACTATGCTTCAATTCCGACTGCAAAGACTTCAAGTCTGATAGACCTAAGAAAGGTTGGAGACTACGTACTGGTGACCTAGCTCAACTCTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACGCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGGAAGCGAATTCATTGTGGGTGTATTGTTTCAAGTAACACCTTTGTATTGTTGGATCCAGGAGGAATTGAATGCTTTACATGTGCCCGCAAAAATATTATTTTGCCATCTAACTTGCCGTGGCCACAATCTTTATCCTTTCAAAATCGTTTATCGGAGAGATATAGAGACATATCTGCCAAAAGTTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTTTGTTCAATTCCGCTTCTTCTTCTGACCAGCCTCCAGATGTGCACTCTCTAGGTGAATTATCAAATAATTTTGACAAAATTTATGGCAATGAAAGATTAACCACCTCATCCTTGGAAAAGAAAAATGAGGATTTGTCTGGATTATCAGCTAATTGGAATGCCAAACTTGGTTCAAGGGAAATGGTGCTTATGAATGGATTGAGGAATGAGGACAAACCGGGTTCGTGTTTAAATATGTGCCAACAGCCTCATTCTCTAAAGGAAGAATCATCTTCTCAACCATTTGGTTTATCAGTACCTTATTCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACCGGAATTCATCCACAACAAACTCCTCCTCATCCTGTCAAACAATTTAGTGGCACCGTCCATTTAGCTCTCGACTCATCAGGTGAAGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAGTCAATTGTTGCCACGGTACTGGCCCAGGTGTACTGATCTGGAGTTACAACAAATATCTATTGATTCTAATTCTGTAATAACTCCCTTGTTCCAAAAGACATTGAGTGCAAGTGATGCTGGGCGAATTGGGCGTTTGGTACTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACAGTAACGTTTAGCCGGTTGGAGCCCGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAATGCAATGCCAGCTGATCAGGATAATGAAGCTAGTAAGACTGGAAACGGACTTTCTGCACATGAAGTTGAATTGACTGATCCCAGTTCTTGGTCAAAAGTTGATAAGTCAGGATACATTGCAAAAGAAGCACTGGGGAGCAAACCTTTAATATCTAGAAAGAGAAAGAACAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATGGAAAATGAGGATATAATAGAACTGAAGATTACATGGCAAGAAGCTCAAGGACTGCTCCGCCCCCCTCCTAACCATGTTCCAAGTATTGTAGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCGGTGCTTGGGAAGCCCACTATTTTCACTACTGATGATATGGGTGAAAGGATTCAGTGGTCTCAATGTGAAGATTGTCTGAAGTGGCGTAAATTGCCAGCTTGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCCGCTGCACAAGAGCTTACTGCAGAACAACTTGAGAATTTGTTACCTCCTTGTAATTCAGTTTCCAAGAAAATGAAGGCTGCTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTTGATACACTTGCAAATCTAGCTATCCTAGGGGAAGGGGAGGCACTCCAGGCATCTTCCCAGGCCACAACTAAACACCCACGACATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAGCCTCCAAGTGGAAAGGGCCCCAAACATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAACGTCGTTTCCGTACCCTTATGTTACGCCGTGAGAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGTAAAAAGCTGCAGCAACAGAATTCCCAGCAATTGCCTTCACCCGAAATTTTGCTTGATGATGATTCCTTGCATAATAGTAATACGGGTGATAGTAGCCCAAACATGAACAAGGAGGGTAATGACTGTTCTGATGATGATCCTCACCGGACAAAATCATCCATGTCTCCGTTCAAAGGCCAAATTGACCTCAATATCCAGCCGGAGCGAGAAGAAGAATTATCACCTGGTTCAGATTCTGGTGGTGTGATGAAGCTGCTCCATGATGCTACTGAGATGTATCTCAAACAGCAACAGCAGCAGCAGCAGCAGAAGACCGTGTTAAACTCCGGAACTGGAGATTCATCAGGTAGTCAGTCACAACAGGTAGGAGATGTAGTGAGGGAAGAGAAGCTTAGCAATGGTGTTATTCATGGTAGCAGTAGTCATAATGCAGATAAGGAGCATGTCCAGTCTTTGTCTATGAACGTGTGA 2664 0.4347 MNSTPSSSSSKLCFNSDCKDFKSDRPKKGWRLRTGDLAQLCDRCGSAFEEGRFCDIFHANASGWRNCETCRKRIHCGCIVSSNTFVLLDPGGIECFTCARKNIILPSNLPWPQSLSFQNRLSERYRDISAKSWSQLAGSGPVPWKQAPSLFNSASSSDQPPDVHSLGELSNNFDKIYGNERLTTSSLEKKNEDLSGLSANWNAKLGSREMVLMNGLRNEDKPGSCLNMCQQPHSLKEESSSQPFGLSVPYSSPNERNGQIGVTGIHPQQTPPHPVKQFSGTVHLALDSSGEAQVRNGRPRADARGRSQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNAMPADQDNEASKTGNGLSAHEVELTDPSSWSKVDKSGYIAKEALGSKPLISRKRKNNILGSKSKRLKMENEDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTTDDMGERIQWSQCEDCLKWRKLPACALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCNSVSKKMKAAKQDPDHAEALEGLDTLANLAILGEGEALQASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKLQQQNSQQLPSPEILLDDDSLHNSNTGDSSPNMNKEGNDCSDDDPHRTKSSMSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDATEMYLKQQQQQQQQKTVLNSGTGDSSGSQSQQVGDVVREEKLSNGVIHGSSSHNADKEHVQSLSMNV 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00418 887 Gene3D - 568 621 - -
Trre4g00418 887 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 834 - -
Trre4g00418 887 MobiDBLite consensus disorder prediction 733 769 - -
Trre4g00418 887 MobiDBLite consensus disorder prediction 440 464 - -
Trre4g00418 887 MobiDBLite consensus disorder prediction 716 887 - -
Trre4g00418 887 ProSiteProfiles Zinc finger CW-type profile. 564 614 IPR011124 GO:0008270
Trre4g00418 887 SMART B3_2 337 437 IPR003340 GO:0003677
Trre4g00418 887 Pfam B3 DNA binding domain 337 436 IPR003340 GO:0003677
Trre4g00418 887 MobiDBLite consensus disorder prediction 823 857 - -
Trre4g00418 887 CDD B3_DNA 335 436 IPR003340 GO:0003677
Trre4g00418 887 Coils Coil 717 740 - -
Trre4g00418 887 SUPERFAMILY DNA-binding pseudobarrel domain 334 437 IPR015300 -
Trre4g00418 887 MobiDBLite consensus disorder prediction 865 887 - -
Trre4g00418 887 FunFam B3 domain-containing transcription repressor VAL1 315 442 - -
Trre4g00418 887 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677
Trre4g00418 887 MobiDBLite consensus disorder prediction 717 732 - -
Trre4g00418 887 Pfam CW-type Zinc Finger 570 611 IPR011124 GO:0008270
Trre4g00418 887 Gene3D - 315 441 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00418 Trre-Chr4 2822570 2831315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00418 243 721 B3 DNA Binding Superfamily AT4G32010 52.653 2.02e-162 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre4g00418 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00418 K09287 - gmx:100807252 1526.92