Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00417 ATGAACTCTACTCCATCATCTTCTTCCTCCAAACTATGCTTCAATTCCGACTGCAAAGACTTCAAGTCTGATAGACCTAAGAAAGGTTGGAGACTACGTACTGGTGACCTAGCTCAACTCTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACGCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGGAAGCGAATTCATTGTGGGTGTATTGTTTCAAGTAACACCTTTGTATTGTTGGATCCAGGAGGAATTGAATGCTTTACATGTGCCCGCAAAAATATTATTTTGCCATCTAACTTGCCGTGGCCACAATCTTTATCCTTTCAAAATCGTTTATCGGAGAGATATAGAGACATATCTGCCAAAAGTTGGAGTCAGTTAGCTGGATCAGGACCTGTACCCTGGAAGCAAGCACCCAGTTTGTTCAATTCCGCTTCTTCTTCTGACCAGCCTCCAGATGTGCACTCTCTAGGTGAATTATCAAATAATTTTGACAAAATTTATGGCAATGAAAGATTAACCACCTCATCCTTGGAAAAGAAAAATGAGGATTTGTCTGGATTATCAGCTAATTGGAATGCCAAACTTGGTTCAAGGGAAATGGTGCTTATGAATGGATTGAGGAATGAGGACAAACCGGGTTCGTGTTTAAATATGTGCCAACAGCCTCATTCTCTAAAGGAAGAATCATCTTCTCAACCATTTGGTTTATCAGTACCTTATTCATCCCCAAATGAAAGAAATGGTCAAATTGGGGTAACCGGAATTCATCCACAACAAACTCCTCCTCATCCTGTCAAACAATTTAGTGGCACCGTCCATTTAGCTCTCGACTCATCAGGTGAAGCTCAGGTTCGCAATGGGCGACCTCGAGCAGATGCCCGAGGAAGAAGTCAATTGTTGCCACGGTACTGGCCCAGGTGTACTGATCTGGAGTTACAACAAATATCTATTGATTCTAATTCTGTAATAACTCCCTTGTTCCAAAAGACATTGAGTGCAAGTGATGCTGGGCGAATTGGGCGTTTGGTACTACCCAAAAAGTGTGCTGAGACCTACTTCCCACCAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGAAAGGAATGGATATTTCAGTTCCGCTTCTGGCCGAATAACAACAGCAGAATGTATGTTTTAGAGGGTGTAACTCCATGCATACAATCCATGCAGTTGCAAGCAGGTGACACAGTAACGTTTAGCCGGTTGGAGCCCGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTACAAATGCAATGCCAGCTGATCAGGATAATGAAGCTAGTAAGACTGGAAACGGACTTTCTGCACATGAAGTTGAATTGACTGATCCCAGTTCTTGGTCAAAAGTTGATAAGTCAGGATACATTGCAAAAGAAGCACTGGGGAGCAAACCTTTAATATCTAGAAAGAGAAAGAACAACATATTGGGTTCAAAAAGTAAACGTCTAAAAATGGAAAATGAGGATATAATAGAACTGAAGATTACATGGCAAGAAGCTCAAGGACTGCTCCGCCCCCCTCCTAACCATGTTCCAAGTATTGTAGTGATTGAAGGCTTTGAGTTTGAGGAATATGAGGATGCTCCGGTGCTTGGGAAGCCCACTATTTTCACTACTGATGATATGGGTGAAAGGATTCAGTGGTCTCAATGTGAAGATTGTCTGAAGTGGCGTAAATTGCCAGCTTGTGCGCTTCTTCCATCAAAATGGACGTGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCCGCTGCACAAGAGCTTACTGCAGAACAACTTGAGAATTTGTTACCTCCTTGTAATTCAGCAGTTTCCAAGAAAATGAAGGCTGCTAAGCAGGATCCTGATCATGCTGAAGCTTTGGAGGGACTTGATACACTTGCAAATCTAGCTATCCTAGGGGAAGGGGAGGCACTCCAGGCATCTTCCCAGGCCACAACTAAACACCCACGACATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAGCCTCCAAGTGGAAAGGGCCCCAAACATAAGCAGACATGCACATGTAATGTCTGTCTAACGGTGAAACGTCGTTTCCGTACCCTTATGTTACGCCGTGAGAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGTAAAAAGCTGCAGCAACAGAATTCCCAGCAATTGCCTTCACCCGAAATTTTGCTTGATGATGATTCCTTGCATAATAGTAATACGGGTGATAGTAGCCCAAACATGAACAAGGAGGGTAATGACTGTTCTGATGATGATCCTCACCGGACAAAATCATCCATGTCTCCGTTCAAAGGCCAAATTGACCTCAATATCCAGCCGGAGCGAGAAGAAGAATTATCACCTGGTTCAGATTCTGGTGGTGTGATGAAGCTGCTCCATGATGCTACTGAGATGTATCTCAAACAGCAACAGCAGCAGCAGCAGCAGAAGACCGTGTTAAACTCCGGAACTGGAGATTCATCAGGTAGTCAGTCACAACAGGTAGGAGATGTAGTGAGGGAAGAGAAGCTTAGCAATGGTGTTATTCATGGTAGCAGTAGTCATAATGCAGATAAGGAGCATGTCCAGTCTTTGTCTATGAACGTGTGA 2667 0.4349 MNSTPSSSSSKLCFNSDCKDFKSDRPKKGWRLRTGDLAQLCDRCGSAFEEGRFCDIFHANASGWRNCETCRKRIHCGCIVSSNTFVLLDPGGIECFTCARKNIILPSNLPWPQSLSFQNRLSERYRDISAKSWSQLAGSGPVPWKQAPSLFNSASSSDQPPDVHSLGELSNNFDKIYGNERLTTSSLEKKNEDLSGLSANWNAKLGSREMVLMNGLRNEDKPGSCLNMCQQPHSLKEESSSQPFGLSVPYSSPNERNGQIGVTGIHPQQTPPHPVKQFSGTVHLALDSSGEAQVRNGRPRADARGRSQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAETYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKATNAMPADQDNEASKTGNGLSAHEVELTDPSSWSKVDKSGYIAKEALGSKPLISRKRKNNILGSKSKRLKMENEDIIELKITWQEAQGLLRPPPNHVPSIVVIEGFEFEEYEDAPVLGKPTIFTTDDMGERIQWSQCEDCLKWRKLPACALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCNSAVSKKMKAAKQDPDHAEALEGLDTLANLAILGEGEALQASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKLQQQNSQQLPSPEILLDDDSLHNSNTGDSSPNMNKEGNDCSDDDPHRTKSSMSPFKGQIDLNIQPEREEELSPGSDSGGVMKLLHDATEMYLKQQQQQQQQKTVLNSGTGDSSGSQSQQVGDVVREEKLSNGVIHGSSSHNADKEHVQSLSMNV 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00417 888 Gene3D - 568 621 - -
Trre4g00417 888 MobiDBLite consensus disorder prediction 440 464 - -
Trre4g00417 888 ProSiteProfiles Zinc finger CW-type profile. 564 614 IPR011124 GO:0008270
Trre4g00417 888 SMART B3_2 337 437 IPR003340 GO:0003677
Trre4g00417 888 Coils Coil 718 741 - -
Trre4g00417 888 Pfam B3 DNA binding domain 337 436 IPR003340 GO:0003677
Trre4g00417 888 MobiDBLite consensus disorder prediction 734 770 - -
Trre4g00417 888 MobiDBLite consensus disorder prediction 866 888 - -
Trre4g00417 888 MobiDBLite consensus disorder prediction 717 888 - -
Trre4g00417 888 CDD B3_DNA 335 436 IPR003340 GO:0003677
Trre4g00417 888 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 835 - -
Trre4g00417 888 SUPERFAMILY DNA-binding pseudobarrel domain 334 437 IPR015300 -
Trre4g00417 888 MobiDBLite consensus disorder prediction 824 858 - -
Trre4g00417 888 FunFam B3 domain-containing transcription repressor VAL1 315 442 - -
Trre4g00417 888 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677
Trre4g00417 888 Pfam CW-type Zinc Finger 570 611 IPR011124 GO:0008270
Trre4g00417 888 Gene3D - 315 441 IPR015300 -
Trre4g00417 888 MobiDBLite consensus disorder prediction 718 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00417 Trre-Chr4 2822570 2831315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00417 243 722 B3 DNA Binding Superfamily AT4G32010 52.653 1.67e-163 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre4g00417 B3 1.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00417 K09287 - gmx:100807252 1533.08