Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00408 ATGTCCAGTTTCGCTTTCTGCAAACGTCTTTCTAGAACTTTCTGTGACAATCGTAGAACCGTTAAACTCATTCTCCTCTGCACCGCCGTTAGTGGTGGCGGCTATTTTGCTTATGGTCAGTTAGCACCATCGGAAGTGGTTACCGATAGGAAAAAAGTGGTGGTGCTAGGAACCGGATGGGCGGCAACAAGTTTTATGAAGAATCTGGACAGTCCGAAGTATGAAGTTCAGGTGGTTTCGCCTCGGAATTATTTTGCATTTACTCCTTTGTTGCCTAGCGTGACTTGCGGCACTGTTGAAGCGCGCAGTATTGTTGAACCTGTTCGTAATATTTTTAGGAAGAAAAAGGTGGATGTGCAATTCAGTGAAGCAGAATGTTTCAAGATTGATGCTGAAAATAGGAAAGTTTATTGTCGGTCTAATGCAAATAATAATTTGGGTGGGAAAGAAGAATTTGTTGTGGATTATGATTACCTAATCATAGGTGTGGGCGCTCAAGTCAACACATTTAACACACCAGGAGTGGTAGAGAATTGTCATTTTTTGAAGGAAGTTGAAGATGCCCAGAAGATTAGAAGAACAGTTATTGACTGCTTTGAGAGAGCAAATTTGCCCGAAGTTAGCGAGGAAGAAAAGAAGAGAATTCTTCATTTTGCTATTGTTGGAGGCGGGCCAACTGGAGTAGAGTTTGCAGCCTCACTTCATGACTTTGTCAATGAGGATTTAGTCAATTTATATCCTGGGATAAAAGATTTAGTAAAAATTACACTTCTAGAAGCCGGAGGTCATCTTTTGAGCATGTTTGACAAAAGGATCACTGCTTTTGCTGAAGATAAGTTTCAAAGAGATGGGATTGATGTGAAAACTGGATCCATGGTTGTGAAGGTAGATGACAAAGAAATTTCTACTAAAGAACTGAAAAATGGAGGAAAGATTACTACAATTCCATACGGAATGGCTGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATTAAAGATTTTATGACACACATTGGTCAGGCTAGCAGACGTGCTCTAGCTACTGATGAATGGTTGAGAGTTGAAGGATGCAACAACGTATATGCGCTTGGTGATTGTGCCACAATAAATCAGCGAAAAGTCATGGAAGATATTGGGGCGATCTTTAAGAAGGCTGACAAAGGCAATTCAGGAACACTTACAGTCAAAGAATTTCAAGCGGTCATGAATGACATTTGTGAACGATATCCTCAGGTTGAGCTGTATCTGAAGAATAAACAGATGCGCAACATTGCTGATTTATTGAAGGAAGCTAAGGGGGATGTCCAAAAAGAATCAATTGAACTGAATATCGAAGAACTCAAAACAGCACTTTCCAAAGTGGATTCTCAGATGAAATTTCTCCCTGCTACAGCGCAGGTTGCCTCTCAGCAAGGAATTTACCTAGCCAAATGTTTTAACCGGATGGAAAAGTGTGAGGAGAAACCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGTCATCGCTTCAAACCCTTCAGGTACAAGCACTTAGGACAGTTTGCTCCTTTGGGAGGAGAGCAGACTGCTGCCCAGCTTCCTGGGGATTGGGTTTCAATTGGTCACAGCAGTCAATGGTTGTGGTATTCTGTATATGCAAGGTACTGTTTATATATATACTCACAAAATTGCCTGAATTTTGAGACATTCTTATCAACAAGTTACTAA 1710 0.4135 MSSFAFCKRLSRTFCDNRRTVKLILLCTAVSGGGYFAYGQLAPSEVVTDRKKVVVLGTGWAATSFMKNLDSPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKVDVQFSEAECFKIDAENRKVYCRSNANNNLGGKEEFVVDYDYLIIGVGAQVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPEVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVNLYPGIKDLVKITLLEAGGHLLSMFDKRITAFAEDKFQRDGIDVKTGSMVVKVDDKEISTKELKNGGKITTIPYGMAVWSTGIGTRPFIKDFMTHIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIGAIFKKADKGNSGTLTVKEFQAVMNDICERYPQVELYLKNKQMRNIADLLKEAKGDVQKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGIYLAKCFNRMEKCEEKPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYARYCLYIYSQNCLNFETFLSTSY 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00408 569 Gene3D - 43 413 - -
Trre4g00408 569 Gene3D - 416 562 - -
Trre4g00408 569 PANTHER NADH DEHYDROGENASE 49 550 IPR045024 GO:0003954|GO:0006116
Trre4g00408 569 Coils Coil 438 458 - -
Trre4g00408 569 SUPERFAMILY EF-hand 367 463 IPR011992 -
Trre4g00408 569 Pfam Pyridine nucleotide-disulphide oxidoreductase 51 376 IPR023753 GO:0016491
Trre4g00408 569 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 42 403 - -
Trre4g00408 569 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Trre4g00408 569 SUPERFAMILY FAD/NAD(P)-binding domain 51 269 IPR036188 -
Trre4g00408 569 SUPERFAMILY FAD/NAD(P)-binding domain 217 371 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00408 Trre-Chr4 2765497 2770837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00408 1 547 Chloroplast and Mitochondria Gene Families AT4G21490 71.300 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00408 K03885 - gmx:100797657 980.704