Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00404 ATGGGAAGAACACCTTGTTGTGAGAAGAATAATGGTCTCAAGAAAGGACCATGGACAACTGAGGAGGATCAAAAACTCATTGATTACATTCAGAAACATGGTTATGGCAATTGGAGGACACTCCCAAAGAATGCTGGTTTGCAAAGATGTGGTAAAAGTTGTCGTTTACGTTGGACAAACTATCTCCGACCAGACATAAAACGAGGACGATTTTCATTTGAAGAGGAAGAGACTATAATTCAACTACATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGATTACCAGGAAGGACGGACAACGAAATAAAGAACTACTGGAACACGCACATTAGAAAAAGGCTTTTGAGAATGGGAATTGATCCGGTGACACATAGTCCTCGACTTGACTTATTGGACCTCTCTTCTATTCTATGTTCATCTCTCTATGGTTCATCATCTCAAATGAACAATTTCCAAAATCTCCTCAACATGGAACAGCCTTTGGTGAATCCTGAGCTTTTAAAGTTAGCTTCATCACTCTTCACAACCTCATCACATCAACAAGATTATAGTAATAATCAAAACCAACCCTTCAATCCTCAAATACATAACCAAATTCAACTTTCACATTTTGGTGAATTTCAAGACCAAGTTCAACAAGTACCTAATTCTAATGCCAATGTTTGTACTACCACATTCACTACCCCTTGTGTTTCATCTTCATTGCCTAATGAATCACATTTATTTGAACCCAAAATTGAAGCATATACATCAAATTTCAATGATATTGAAAATTGGTATGAAAATGGGTTTGGTTCAAGTACCTTAAAAGAGGATTATGTCCCTCAATTATCAAGCCAAAATTATTATTATGGTTCTGATAATCAAAATTTCATGTATCAAAATTCAAACCAAATTTTATCAACACCATCATCTAGTACTCCCACACCTTTGAATTCAAACTCCACATGTATCCTTGGGAGCAATACAGAAGATGAGAGAGAAAGCTATGATAGTTGTAATAGGTTGAATTTTGAAATCCCTGCACATATTTTAGAGGCCAATGATTTCATGTAA 1065 0.3624 MGRTPCCEKNNGLKKGPWTTEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILCSSLYGSSSQMNNFQNLLNMEQPLVNPELLKLASSLFTTSSHQQDYSNNQNQPFNPQIHNQIQLSHFGEFQDQVQQVPNSNANVCTTTFTTPCVSSSLPNESHLFEPKIEAYTSNFNDIENWYENGFGSSTLKEDYVPQLSSQNYYYGSDNQNFMYQNSNQILSTPSSSTPTPLNSNSTCILGSNTEDERESYDSCNRLNFEIPAHILEANDFM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00404 354 FunFam MYB-related transcription factor 14 67 - -
Trre4g00404 354 SMART sant 67 115 IPR001005 -
Trre4g00404 354 SMART sant 14 64 IPR001005 -
Trre4g00404 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre4g00404 354 Gene3D - 14 67 - -
Trre4g00404 354 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre4g00404 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Trre4g00404 354 Gene3D - 70 117 - -
Trre4g00404 354 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Trre4g00404 354 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre4g00404 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre4g00404 354 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre4g00404 354 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre4g00404 354 CDD SANT 70 113 IPR001005 -
Trre4g00404 354 FunFam Transcription factor MYB39 70 131 - -
Trre4g00404 354 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00404 Trre-Chr4 2733866 2735162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00404 1 354 MYB Transcription Factor Family AT4G21440 53.887 6.63e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre4g00404 Myb_DNA-binding 6.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00404 K09422 - gmx:778071 434.491