Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00402 ATGGGGAAAAAATCAACGACGGAGGAAGTCAAACTGGAAATTCCGCCGGATAATCTCCGGTGCACCCGCACCGACGGACGGCAATGGCGGTGCAAAAGAAGAGCGATGGAAAACGTGAAATTATGCGAGGCTCATTATCTTCAAGGTAAAATTCGGCAGAACAAAGAGAAGGTACCAGAATCACTGAAACTTCAAAGAAACGTGAAGATGAAGAAGAGGAAGAAAAACGACGTCGTTGAAATTAGGTCAAAGAAGAAAAAGAAGAAGAATGGTGATGTTCAATTGGAGTTGATAAGGATGGTGTTACAGAGAGAGGTTGATAAGAAGAAGAAGATGAAGAACAACAACAACAACAACAACAACACAGTTGAAGAATTGGAATTGCAGCATTACAGTGAAGGAGAATTGAGAAAAGAATTACCCAATGGGGTTATGGAAATTGCTCCTCCTTCAACATCACATGATGTTGATTTTCACTGTAATGGTAAATCAATTCTTACACCACGTTACTTCAGGTCCAAGAATGTTGATAGAAGAGTCAATTTTGATCATTTGCAGGTTTTGAAGAAGGGGAAGAGGAAGAAGTGTCATTGGTGTCAGAGTAGTGATTCTTTGAATCTGATTAAGTGTTCTAACTGCCAGAATGAGTTTTTCTGCATGGATTGCATTAAACAACGGTATTTCGAAACTCAAAATGATGTTAAGACGGCGTGTCCAGTTTGTCGAAGAACTTGCACATGTAAAGATTGTAGGGCAAGTCAGTGTAAGGACCGTGAAAGTAAGGATTATTTGGCTGGTACAAGCAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTTTGCTCCTTCCTGTACTGAAACAAATAAGCGAAGACCAGCATACAGAGCTCGAAACAGAAGCAAAAAATACAGGAAAAAATATTTCTGATATTCTCATCAAGCAGGTCGAATTTGGCTGCAATGAGAAAAATTGCTGCAACTACTGCAAAACACCCATTCTGAATCTTCACAGAAGCTGCTTTAGTTGTTCCTACAGCCTTTGCTTAAGATGTTGTCAGACATTAAGTCAAGGAAGCCCCTTTGAGCATATAAATTCTTCAACTTCCAACTTACCTGACAAAATGGACGATTGCGTTGCTGACGAAAGTTGCCTTTCGGATGATAAGACCATTTCTAGTGACAACGTAACTGATACTTCAATGTTACCGGATTGGACTGGTTGTATTGGTACTACTGACAGTGTATCATGCCCTCCAACAGAGCTAGGTGGTTGCGGCAATAGCCACCTTGACTTGAGATGTGTTTTTCCCTTAAGCTGGATCGAAGAATTGGAAGCTAAGGCGGAAGAAATAGTTTGCAGCTATGACGTTCCTGAAATGTTGGATAAAAATTCAAGTTGCTCACTTTGTATTGACAAAGATCATAAAACTAACAGATATAAGCAATTGAAGGAAGCTGCTCGAAGAGAAGATTCTGATGACAATTGCTTATTTTATCCTACAGTTTTCGACATCAGTTGTGATCATTTTGAACATTTTCAGAAGCACTGGGGAAAAGGCCATCCTGTACTAGTGCGAGACGTGCTCCGAAGTACAAAAACCCTCAGTTGGGATCCTCTGTCTATGTTCTGTGCTTATCTCGAGAGGAGCATTACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATCGGTGGGAGGTGGAAATTAACATTAGACAGGATTTTACCGGGTCTCTTAAATGTCAACCTCGGAAAAATGATTGGCATGAGATGCTGAAACTAAATGGATGGCTATCTTCCCAACTATTCAAGGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGGTGCTCTTCCAATTCAAGAATACATGAATCCCAGATATGGTCTTCTGAATTTAGCTGCATATATGAAAGATGGGAGTGCAAAACACGACAAAGGTCCATATGTTTATATTTCTCATGGCTGCGCTGACAACGAAGCTTATTACGTGCTAAATCTCTCTTATGAACCATATGATGTGGTTAATATTATGGCACATACCTCAGATGCTCCTCTCTCTACGGAACATCTTACTAAGATAACCAAGTTATTGAAAAAGCACAGAAATCTGTGTCAAAGGGACTCGCCAAAGATTACTACCGAGCATGCAGAAGACATGGAACTAAAGGAACCAGAAAGTATTGCACGGGAAGGAACTGACTTTCACAGGAGAGTCAATAGAACGTCTTACATCTCCACTGAAGTCAAAACAATAGCTAGTCGGAGTTTAGATAACAATACTTCCAGCAATGGAGAATGCCGTTCTGGTTCTGATACTGAAAAGGCGCAAAGCTTCTCACCTTTCCAGAAGACAGTTCGGAGTACTGACGTGTATTCTGTTGCTCAGTGGGATGTCTTCCGAAGACAGGATGTACCAAAGCTTCTGGAATACCTTAAAAGACATGCCGATGAATTTTCTTATACCAATGAATATGGCAGTGAGAAGATGGTTCACCCAATTCTAGATCAGAGCATCTTTCTGGACACTACTCACAAAATGAGACTGAAGGAGGAATTTGATATCGAACCATGGACATTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATTAGGAATTCTAAGTGTTGTGTTCATGTGGTATTGAAATTTATGTCTCCTGAGAGTGTTGCCGAGTGTATCCAATTGACTGATGAAATCCATCTGCTTCCAGAAGACCATAAAGCAGAAGTAGACAAACTAGAGGTGAAGAAAATGGCTCTTCATAGTGTGGAGACGGCAATAAAAGAAATACGCGAGCTCACGTCCAATCCAAAGCATGATTGA 2859 0.4043 MGKKSTTEEVKLEIPPDNLRCTRTDGRQWRCKRRAMENVKLCEAHYLQGKIRQNKEKVPESLKLQRNVKMKKRKKNDVVEIRSKKKKKKNGDVQLELIRMVLQREVDKKKKMKNNNNNNNNTVEELELQHYSEGELRKELPNGVMEIAPPSTSHDVDFHCNGKSILTPRYFRSKNVDRRVNFDHLQVLKKGKRKKCHWCQSSDSLNLIKCSNCQNEFFCMDCIKQRYFETQNDVKTACPVCRRTCTCKDCRASQCKDRESKDYLAGTSRVDRILHFHYLVCLLLPVLKQISEDQHTELETEAKNTGKNISDILIKQVEFGCNEKNCCNYCKTPILNLHRSCFSCSYSLCLRCCQTLSQGSPFEHINSSTSNLPDKMDDCVADESCLSDDKTISSDNVTDTSMLPDWTGCIGTTDSVSCPPTELGGCGNSHLDLRCVFPLSWIEELEAKAEEIVCSYDVPEMLDKNSSCSLCIDKDHKTNRYKQLKEAARREDSDDNCLFYPTVFDISCDHFEHFQKHWGKGHPVLVRDVLRSTKTLSWDPLSMFCAYLERSITRYENNKDLLEACLDRWEVEINIRQDFTGSLKCQPRKNDWHEMLKLNGWLSSQLFKEQFPAHFAEVIGALPIQEYMNPRYGLLNLAAYMKDGSAKHDKGPYVYISHGCADNEAYYVLNLSYEPYDVVNIMAHTSDAPLSTEHLTKITKLLKKHRNLCQRDSPKITTEHAEDMELKEPESIAREGTDFHRRVNRTSYISTEVKTIASRSLDNNTSSNGECRSGSDTEKAQSFSPFQKTVRSTDVYSVAQWDVFRRQDVPKLLEYLKRHADEFSYTNEYGSEKMVHPILDQSIFLDTTHKMRLKEEFDIEPWTFEQHVGEAVIIPAGCPYQIRNSKCCVHVVLKFMSPESVAECIQLTDEIHLLPEDHKAEVDKLEVKKMALHSVETAIKEIRELTSNPKHD 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00402 952 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Trre4g00402 952 Coils Coil 109 129 - -
Trre4g00402 952 Pfam WRC 16 57 IPR014977 -
Trre4g00402 952 ProSiteProfiles Zinc finger RING-type profile. 196 242 IPR001841 -
Trre4g00402 952 Coils Coil 552 572 - -
Trre4g00402 952 ProSiteProfiles JmjC domain profile. 626 912 IPR003347 -
Trre4g00402 952 Gene3D Cupin 503 921 - -
Trre4g00402 952 SMART cupin_9 611 912 IPR003347 -
Trre4g00402 952 MobiDBLite consensus disorder prediction 759 784 - -
Trre4g00402 952 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 948 IPR045109 GO:0032454|GO:0033169
Trre4g00402 952 Pfam JmjC domain, hydroxylase 792 892 IPR003347 -
Trre4g00402 952 SUPERFAMILY Clavaminate synthase-like 510 941 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00402 Trre-Chr4 2699287 2704262 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre4g00402 JmjC 2e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00402 K15601 - gmx:100799234 1251.11