Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00395 ATGTCATCTTCTTCTGTTGCCAACTTTCAACATCTTCAATACCTGGCTAGGCTTTCATCTCCGTTTCTTGAGGATCACATTGTTTCAGAACAAGATAATAGTGCATTAGGTGTGAAGGAAGGAAGAATGAGGAATCTGGTTTCGAGTTTCCCTGAAATTCAAGACAAGGTAGCAGATTTGGAGCCCCAAGGTGTTGTTGACTGGAGGAGTTTACCTGATGATGTAGTAATTCAGCTATTGTCATGTCTGAGTTATCGAGACCGAGCTAGTTTATCAGCAAGTTGTAAGACATGGAGGATTCTTGGTAACTCCCCGTGTTTGTGGACTTCTTTGGATCTTCGTTTGCACAAGTTTGATGCCAATGTTGCATCTTCACTTGCTTCTAGATGTGTGCATCTACAGAAGCTTAGGTTTTGTGGCGCAGAGGCTGCTGAGGCACTGCTTCTACTTCGAGCTAAGAACTTGCGTGAATTAAGCGGTGACAATTGCGGGGAGATGACTGATAGAACTCTTACTTTGATTGCTGCCCGACATGAGTTACTCCAGAGTCTTCAGTTTGGACCAGATTTTTGTGAAAAAGTTACTAGTGATACTGTAAAAACAATAGCTCACTGCTGCCCTAGTTTGAATCAACTCAGGCTTTCAGGCATTAGGGATGTAAATGCTGATGCTATTAATGCATTGTCTACCTATTGTCCAAAGTTGACTGATATCGGCTTCATCGACTGCCTTAGTGTTGACGAGCTTGCATTGGGAAATGTGCAATCGGTTCGTTTCCTTTCTGTTGCGGGGACACCAAGTATGAAGTGGAGTGTGGTTTCACATCTTTGGCATAAGCTTCCTAACCTGACTGGATTAGATGTTTCAAGAACCGATATTGGTCCGTCTGCTGTTTCAAGATTGTTATCCTTATCACCAAATTTGAAGATTTTGATTGCTTTGAATTGTTCTATCCTCGAAGAAGAGACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTGTTGATTTCCCTATCCACGGATATTTTTAAAGGACTAGGTTCTTTATTTTTTGATAATACAAATAGAGGAAAGAATGTGTTTTTGGACTGGAGGACTTCAAAGAGGAATAATGATAAGGGCCTTGATGAAATTATACCTTGGCTTGAATGGATGTTATCACATAATCTTTTGCGTTCTGCTGAGACTGAGAGCCCTCAACAGGAAGGTCTTGATAATTTCTGGGTCGAACAAGGTGTGTCACTTTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCCACAGGCCTTGCAACTTTTGTTCTAATGGATGATGAAAATGCTAGCATTAATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGTGGTATACGCCTCCTTCTTGGCCTTGCAAAATCTTACAGGGAAGGGCTTCAGTTTGCGGGAGCTACGGCTATTGCGAGTTTGTCCATGAGTGCTAATGTGGCGAAGGCGATTGCAGAAGAGGGTGGGATTGAGATTCTCACTAGTTTGGCTAGGTCAACAAACAAACTGGTGGCCGAAGAAGCTGCTGGAGGATTATGGAATCTCTCTATTAGAAAAGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGCGTACAAGCGTTGGTGGATCTTATATTCAGGTGGTCCTCTACTGGAGATGGAGTTTTAGAACGTGCAGCTGGTGCATTGGCTACTTTGGCTTCTGACGACAAGTGTAGTACAGAGGTTGCACTAGCAGGAGGCATGCACGCTCTAGTGATGCTTGCACGTAACTGCAAATACGAGGGAGTGCAAGAGCAGACTGCTCGTGCCTTGGCTAATTTAGCTGTTGGACGAGCTGTCAGGGAAGCTGTCGGACAAGAAGAGGGTGTTTTTGAGGCTCTTGTTCAACTTACACGTTCTCCCCATGAGGGTGTCAGGCAAGAAGCTGCTCATGCACTTTCAAATTTTTCATTTAACGATAGAAATCAAGAGGCCATTGCAGCAGCTGGTGGAGTTCAAGCTTTGGTTGCTCTTGCCCAATCTTGTTCTAATGCTTCCCCTAGACTTCAAGTGAGGGCTGCTGCTGCTCTATTGGGATTGTCAGTTTCTGAAACCAATAGCATTGCTATTGGACGAGAAGGAGGAGTTGCACCTCTGATTGCACTGGCACGGTCCGAAGCAGAGGATGTTCATGAAGCAGCTGCAGGAGCACTATGCAATCTTGCTTTAAACCCCGGTAATGCTTTACTAATAGTGGAGGAAGGTGGAGTAGCTGCACTTGATGATCTCTGTTCATCATCAGTGTCAACAATGGCACGGTTTAATGCGGCATTGGCTTTGGCCTACATGTTTGATGGGAGAATGGACGAATTCGCTTCAGTCGGCACCTTGTCAGAAAGTGTTTCTAAGAGTGTGGGCCTGGATGGAGACAGAAGGGTATCTCTGAAACACATTGGAGCATTCGTCCGCATGTTTTCTAATAAACGAGCATTTGTGGCTGCTGCTGCGGCATCAGCTCCTGCAGATCTAGCACAGTTTACTGAAAGTGCTCGTATTCAAGAAGCGGGAGATCGTAGATGCAGTGGTGCTGAAGTTGAAAGACTTGTTACTATGCTACAAAATCCGTCGCCTATACTCAAAGCTTGTGCAGCATTTACTCTTCTACAGCTTACAATTCCTGGTGGACATTACACCATTCACCATGCCAGCCTCATGCAAAATGCAGGTGCAGAAGAAGTTCTACGCAGTGTAGCTGCTGCAGCAACCACACCTCTTGAAGCAAAAATCTTTGCCAAGATTGTTCTTCGTAATCTCAAGTATCAGCACTTAGTGATCAAATAG 2841 0.4449 MSSSSVANFQHLQYLARLSSPFLEDHIVSEQDNSALGVKEGRMRNLVSSFPEIQDKVADLEPQGVVDWRSLPDDVVIQLLSCLSYRDRASLSASCKTWRILGNSPCLWTSLDLRLHKFDANVASSLASRCVHLQKLRFCGAEAAEALLLLRAKNLRELSGDNCGEMTDRTLTLIAARHELLQSLQFGPDFCEKVTSDTVKTIAHCCPSLNQLRLSGIRDVNADAINALSTYCPKLTDIGFIDCLSVDELALGNVQSVRFLSVAGTPSMKWSVVSHLWHKLPNLTGLDVSRTDIGPSAVSRLLSLSPNLKILIALNCSILEEETSFSASKYKNKLLISLSTDIFKGLGSLFFDNTNRGKNVFLDWRTSKRNNDKGLDEIIPWLEWMLSHNLLRSAETESPQQEGLDNFWVEQGVSLLLSLMQSSQEDVQERAATGLATFVLMDDENASINCGRAEAVMRDGGIRLLLGLAKSYREGLQFAGATAIASLSMSANVAKAIAEEGGIEILTSLARSTNKLVAEEAAGGLWNLSIRKEHKGAIAEAGGVQALVDLIFRWSSTGDGVLERAAGALATLASDDKCSTEVALAGGMHALVMLARNCKYEGVQEQTARALANLAVGRAVREAVGQEEGVFEALVQLTRSPHEGVRQEAAHALSNFSFNDRNQEAIAAAGGVQALVALAQSCSNASPRLQVRAAAALLGLSVSETNSIAIGREGGVAPLIALARSEAEDVHEAAAGALCNLALNPGNALLIVEEGGVAALDDLCSSSVSTMARFNAALALAYMFDGRMDEFASVGTLSESVSKSVGLDGDRRVSLKHIGAFVRMFSNKRAFVAAAAASAPADLAQFTESARIQEAGDRRCSGAEVERLVTMLQNPSPILKACAAFTLLQLTIPGGHYTIHHASLMQNAGAEEVLRSVAAAATTPLEAKIFAKIVLRNLKYQHLVIK 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00395 946 SMART arm_5 703 743 IPR000225 GO:0005515
Trre4g00395 946 SMART arm_5 744 785 IPR000225 GO:0005515
Trre4g00395 946 SMART arm_5 531 574 IPR000225 GO:0005515
Trre4g00395 946 SMART arm_5 659 702 IPR000225 GO:0005515
Trre4g00395 946 SMART arm_5 490 530 IPR000225 GO:0005515
Trre4g00395 946 SMART arm_5 618 658 IPR000225 GO:0005515
Trre4g00395 946 SMART arm_5 575 616 IPR000225 GO:0005515
Trre4g00395 946 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 714 756 IPR000225 GO:0005515
Trre4g00395 946 Gene3D - 686 944 IPR011989 -
Trre4g00395 946 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 586 629 IPR000225 GO:0005515
Trre4g00395 946 Pfam Armadillo/beta-catenin-like repeat 533 574 IPR000225 GO:0005515
Trre4g00395 946 Pfam Armadillo/beta-catenin-like repeat 706 742 IPR000225 GO:0005515
Trre4g00395 946 Pfam Armadillo/beta-catenin-like repeat 622 657 IPR000225 GO:0005515
Trre4g00395 946 Pfam Armadillo/beta-catenin-like repeat 495 529 IPR000225 GO:0005515
Trre4g00395 946 SUPERFAMILY F-box domain 68 108 IPR036047 GO:0005515
Trre4g00395 946 Gene3D - 552 685 IPR011989 -
Trre4g00395 946 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 670 715 IPR000225 GO:0005515
Trre4g00395 946 SUPERFAMILY ARM repeat 407 785 IPR016024 -
Trre4g00395 946 Gene3D - 379 551 IPR011989 -
Trre4g00395 946 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 501 543 IPR000225 GO:0005515
Trre4g00395 946 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 629 671 IPR000225 GO:0005515
Trre4g00395 946 SMART fbox_2 71 111 IPR001810 GO:0005515
Trre4g00395 946 ProSiteProfiles F-box domain profile. 65 111 IPR001810 GO:0005515
Trre4g00395 946 Gene3D Ribonuclease Inhibitor 61 342 IPR032675 -
Trre4g00395 946 Pfam F-box-like 68 114 IPR001810 GO:0005515
Trre4g00395 946 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 587 IPR000225 GO:0005515
Trre4g00395 946 SUPERFAMILY RNI-like 94 323 - -
Trre4g00395 946 PANTHER PROTEIN ARABIDILLO 1 53 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00395 Trre-Chr4 2627542 2631408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00395 629 787 U-box Gene Family AT2G23140 35.625 1.97e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00395 - - gmx:100805530 1326.23