Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00394 ATGGGTGTTGCTTCAAATGGTGGTGGTTATAGAACCACTACACACCCTTACAAGTTGAACTTTCAGTACTCATCCACTGTTCAGCATTTGCCTTCCTTGCAAATCACAAAGTCACCTTACCATTTTGTTCCAATATCTGACATTATTGGTGGTGGATATGACACTGATTATTTGTCCGATGTTATTGGTGTTTTGACTGGTGTTGGGAGTGAAAGAGAACTAGAGAAAAATGGAGCAACCACTAAGTTGAATGTCATTGCTCTTGAAGCTGAAGGGTTCAAAATCCAATGTACTCTTTTTGGCAACTATTGTGATGAACTAAACAACTTCATTGCTGCTGGAGATGTTCAGAATGCAGTTGTTATTATTCAACTTGCCAAAGTTAAAAATTTTCAAGATAAGGTGCACCTACAGAATTGTATGGCTTGCACCCGCTTAATCTTCAATCCTAATTGTGAAGAAGCTAGGGTTCTTAGGAATAGGTTTGCTGATAGTGGGGATTCTCCATCCCCATTAACCTTAACACAAATTTGTGCTGAACCAAGGGTCAGTACTTTAGAAGAATTCATGTACAACACACCAAGGACAACAATCCAAGGACTTAAAGATGCTACTACAGATTCATTGTTTGTCGTGCTTGGAACTATTAAAAAAAATTTGAACCCTGAAACCTTTTGGTACACTTCATGCTCTTGCTCCAAAGCTGTAATTCCAGATTCAGGATTGCACTTTTGCGAAAAATGTGATAGGCATGTACCTAGAGTTTTCCCTAGGTTTTGTATCAAAGTGAGAGTTTTGGACAACACTGATTGTGGATCTTTTGTGATCTTTGACAATGATGCATCTCTTCTTTTCCGCAAGACATGCCAAGATGTGCTGGATTCCATTCCTAGAGGTTCTCCTGTTGGCTTTCTTCCAAATGAGGTTGCTGGTTTGGTTGACCAGACCTTACTCTTCAAGGTTGAGACAAAAGCCAAGTTCAACATGAGGTTTGAACAAAGTTTTCGTGTTAGAAAAATCTGTAAGGATGCAAATGTCATAACTGAGTTTAAAAAGAAATGGGATACCGAAGATGCTTCTTTCTCTAAATCTTCTAATGAAAATGCTTCATTGTCAACCTTAATGGACAAAGGGAAACAACTTTTGCTTGAAGGACCTTCTGATGGTTTAAGTCAGGATATTGTTTGTCTATCTTCCCCAAATCCTATGCTTAAAGGCAATGTTGGTGAGGGTTCTGACTCTATTAAAGAGGATTTGATGACCAAATTTGGTCAAGCTGTGCAAAGTGGTGATGATAAAACACCAACTGTCAAGGAAGTTAAGAGATCATCCCCCACTAACCAAGATGAGGAAGACATGGATCTGCCATTGAAGTTGCTCAAGAGAAGCATCAAGATTGAGAAGCTCTAG 1410 0.3908 MGVASNGGGYRTTTHPYKLNFQYSSTVQHLPSLQITKSPYHFVPISDIIGGGYDTDYLSDVIGVLTGVGSERELEKNGATTKLNVIALEAEGFKIQCTLFGNYCDELNNFIAAGDVQNAVVIIQLAKVKNFQDKVHLQNCMACTRLIFNPNCEEARVLRNRFADSGDSPSPLTLTQICAEPRVSTLEEFMYNTPRTTIQGLKDATTDSLFVVLGTIKKNLNPETFWYTSCSCSKAVIPDSGLHFCEKCDRHVPRVFPRFCIKVRVLDNTDCGSFVIFDNDASLLFRKTCQDVLDSIPRGSPVGFLPNEVAGLVDQTLLFKVETKAKFNMRFEQSFRVRKICKDANVITEFKKKWDTEDASFSKSSNENASLSTLMDKGKQLLLEGPSDGLSQDIVCLSSPNPMLKGNVGEGSDSIKEDLMTKFGQAVQSGDDKTPTVKEVKRSSPTNQDEEDMDLPLKLLKRSIKIEKL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00394 469 Gene3D - 34 170 IPR012340 -
Trre4g00394 469 CDD RPA1_DBD_C 210 353 IPR047192 -
Trre4g00394 469 Pfam Replication factor-A C terminal domain 214 293 IPR013955 -
Trre4g00394 469 SUPERFAMILY Nucleic acid-binding proteins 40 164 IPR012340 -
Trre4g00394 469 CDD RPA1_DBD_B_like 60 162 - -
Trre4g00394 469 MobiDBLite consensus disorder prediction 425 454 - -
Trre4g00394 469 Gene3D - 184 352 IPR012340 -
Trre4g00394 469 MobiDBLite consensus disorder prediction 434 454 - -
Trre4g00394 469 SUPERFAMILY Nucleic acid-binding proteins 194 340 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00394 Trre-Chr4 2623711 2626122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00394 17 277 Core DNA Replication Machinery Family AT2G06510 26.354 1.25e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00394 - - tpra:123915045 515.768