Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00393 ATGGGTGTTGCTTCAAATGGTGGTGGTTATAGAACCACTACACACCCTTACAAGTTGAACTTTCAGTACTCATCCACTGTTCAGCATTTGCCTTCCTTGCAAATCACAAAGTCACCTTACCATTTTGTTCCAATATCTGACATTATTGGTGGTGGATATGACACTGATTATTTGTCCGATGTTATTGGTGTTTTGACTGGTGTTGGGAGTGAAAGAGAACTAGAGAAAAATGGAGCAACCACTAAGTTGAATGTCATTGCTCTTGAAGCTGAAGGGTTCAAAATCCAATGTACTCTTTTTGGCAACTATTGTGATGAACTAAACAACTTCATTGCTGCTGGAGATGTTCAGAATGCAGTTGTTATTATTCAACTTGCCAAAGTTAAAAATTTTCAAGTAATTTATATGGTATGTGTAGATAAGGTGCACCTACAGAATTGTATGGCTTGCACCCGCTTAATCTTCAATCCTAATTGTGAAGAAGCTAGGGTTCTTAGGAATAGGTTTGCTGATAGTGGGGATTCTCCATCCCCATTAACCTTAACACAAATTTGTGCTGAACCAAGGGTCAGTACTTTAGAAGAATTCATGTACAACACACCAAGGACAACAATCCAAGGACTTAAAGATGCTACTACAGATTCATTGTTTGTCGTGCTTGGAACTATTAAAAAAAATTTGAACCCTGAAACCTTTTGGTACACTTCATGCTCTTGCTCCAAAGCTGTAATTCCAGATTCAGGATTGCACTTTTGCGAAAAATGTGATAGGCATGTACCTAGAGTTTTCCCTAGGTTTTGTATCAAAGTGAGAGTTTTGGACAACACTGATTGTGGATCTTTTGTGATCTTTGACAATGATGCATCTCTTCTTTTCCGCAAGACATGCCAAGATGTGCTGGATTCCATTCCTAGAGGTTCTCCTGTTGGCTTTCTTCCAAATGAGGTTGCTGGTTTGGTTGACCAGACCTTACTCTTCAAGGTTGAGACAAAAGCCAAGTTCAACATGAGGTTTGAACAAAGTTTTCGTGTTAGAAAAATCTGTAAGGATGCAAATGTCATAACTGAGTTTAAAAAGAAATGGGATACCGAAGATGCTTCTTTCTCTAAATCTTCTAATGAAAATGCTTCATTGTCAACCTTAATGGACAAAGGGAAACAACTTTTGCTTGAAGGACCTTCTGATGGTTTAAGTCAGGATATTGTTTGTCTATCTTCCCCAAATCCTATGCTTAAAGGCAATGTTGGTGAGGGTTCTGACTCTATTAAAGAGGATTTGATGACCAAATTTGGTCAAGCTGTGCAAAGTGGTGATGATAAAACACCAACTGTCAAGGAAGTTAAGAGATCATCCCCCACTAACCAAGATGAGGAAGACATGGATCTGCCATTGAAGTTGCTCAAGAGAAGCATCAAGATTGAGAAGCTCTAG 1431 0.3885 MGVASNGGGYRTTTHPYKLNFQYSSTVQHLPSLQITKSPYHFVPISDIIGGGYDTDYLSDVIGVLTGVGSERELEKNGATTKLNVIALEAEGFKIQCTLFGNYCDELNNFIAAGDVQNAVVIIQLAKVKNFQVIYMVCVDKVHLQNCMACTRLIFNPNCEEARVLRNRFADSGDSPSPLTLTQICAEPRVSTLEEFMYNTPRTTIQGLKDATTDSLFVVLGTIKKNLNPETFWYTSCSCSKAVIPDSGLHFCEKCDRHVPRVFPRFCIKVRVLDNTDCGSFVIFDNDASLLFRKTCQDVLDSIPRGSPVGFLPNEVAGLVDQTLLFKVETKAKFNMRFEQSFRVRKICKDANVITEFKKKWDTEDASFSKSSNENASLSTLMDKGKQLLLEGPSDGLSQDIVCLSSPNPMLKGNVGEGSDSIKEDLMTKFGQAVQSGDDKTPTVKEVKRSSPTNQDEEDMDLPLKLLKRSIKIEKL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00393 476 CDD RPA1_DBD_B_like 60 169 - -
Trre4g00393 476 SUPERFAMILY Nucleic acid-binding proteins 40 171 IPR012340 -
Trre4g00393 476 MobiDBLite consensus disorder prediction 441 460 - -
Trre4g00393 476 MobiDBLite consensus disorder prediction 432 460 - -
Trre4g00393 476 Gene3D - 34 177 IPR012340 -
Trre4g00393 476 CDD RPA1_DBD_C 217 360 IPR047192 -
Trre4g00393 476 Gene3D - 191 359 IPR012340 -
Trre4g00393 476 Pfam Replication factor-A C terminal domain 221 300 IPR013955 -
Trre4g00393 476 SUPERFAMILY Nucleic acid-binding proteins 201 347 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00393 Trre-Chr4 2623711 2626122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00393 17 284 Core DNA Replication Machinery Family AT2G06510 25.352 4.79e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00393 - - tpra:123915045 508.834