Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00386 ATGGAGGAGACAATGATCAACATTGAAGAAGGAGAGTCTTCAAATTCAAAAGACACACTGTTTGTTTGCGAAATCTGCACGAACACTAAAACAATGAGCGATGCTTTCTACATCAGCGGTTGCCATCACGCTTATTGCTCCGATTGCGTAGCCATGTACATCAGTTCCAAACTTGAAGAAAACATCACAAACATTGTATGTCCTGTTCCTGGGTGCAGTGGTTCATTAGAAGTGGACTTTTGCCGTTCAATTCTTCCGGCTGAGGTTTTTGAACGGTGGGGTAACGCGTTGTGTGAGATTTCAATCGATGTATCGCAGAAATTCTTTTGTCCTTTCGCAGACTGTTCTGCTCTTTTGATCAATGACGGAACCGAGACTGTTAAAAATTCTGAAAATGTCCTAATTGTAAAAGAATGTTTTGTGCACAATGTAAGGTTCCATGGCATAAAGGAATAA 456 0.4079 MEETMINIEEGESSNSKDTLFVCEICTNTKTMSDAFYISGCHHAYCSDCVAMYISSKLEENITNIVCPVPGCSGSLEVDFCRSILPAEVFERWGNALCEISIDVSQKFFCPFADCSALLINDGTETVKNSENVLIVKECFVHNVRFHGIKE 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00386 151 ProSiteProfiles TRIAD supradomain profile. 19 151 IPR044066 -
Trre4g00386 151 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 139 IPR031127 GO:0004842|GO:0016567
Trre4g00386 151 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Trre4g00386 151 Pfam Zinc finger, C3HC4 type (RING finger) 23 68 IPR018957 GO:0046872
Trre4g00386 151 FunFam RBR-type E3 ubiquitin transferase 18 104 - -
Trre4g00386 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 105 IPR013083 -
Trre4g00386 151 ProSiteProfiles Zinc finger RING-type profile. 23 69 IPR001841 -
Trre4g00386 151 SUPERFAMILY RING/U-box 18 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00386 Trre-Chr4 2597013 2597468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00386 1 126 C3H Transcription Factor Family AT2G31770 24.615 2.28e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00386 K11975 - csav:115705079 169.474