Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00385 ATGTTGATGAAACTTGCGAAGGATAATAAGTGGAGGCGATGTCCCAAATGCAGATTTTATGTTGCAAAATTTGAGGGTTGCCACCACATGACATGCAGGTGTGGCTGTAGATTTTGTTACAAATGTGGAGGTGCCTACGTTGACGACAGTAACAGATGCAAATGTTATTTGGTGAAGCCCAATCAACAACAAGAAGAAATTCACTTTCACCCCGCTGTTGAATGTTTAGGTGTTTTATTATTCATTCTCTTTATTTTTTCGCCACTACTAATACCACTACTAGTCTGGTATATTGAACAATGA 303 0.3861 MLMKLAKDNKWRRCPKCRFYVAKFEGCHHMTCRCGCRFCYKCGGAYVDDSNRCKCYLVKPNQQQEEIHFHPAVECLGVLLFILFIFSPLLIPLLVWYIEQ 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00385 100 Gene3D - 1 73 - -
Trre4g00385 100 Coils Coil 98 100 - -
Trre4g00385 100 SUPERFAMILY RING/U-box 3 59 - -
Trre4g00385 100 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 69 IPR031127 GO:0004842|GO:0016567
Trre4g00385 100 CDD Rcat_RBR_unk 10 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00385 Trre-Chr4 2594879 2596959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00385 14 48 C3H Transcription Factor Family AT2G31760 54.054 3.68e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00385 K11975 - vri:117922603 82.8037