Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00371 ATGTTACTACATATTTTATTAACTCTCCTAATCCTTTACATGATCAAAATTGGCAGTGCTGCTATGTACACAATTACAACCTCTCAATTGATCAAAGATTCTGAAACTATAAGCTCAAACGATGATGCATTCAAGTTTGGATTCTTTAGTCCCGCTAACACAACAAATCGCTACGTAGGAATTTGGTATCTCGAAGAATCGAACATCATATGGGTCGCCAACAGAGAAAAACCATTGACAGATTTTTCCGGTATTGTCACCATATCTGATGACAATACGAACCTTTTAGTACTAAATGGACAAAAACATGTTATATGGTCATCAAACGTCTCCAATTTTGCATCAAATTCTAATGTCACAGCTCATCTTCAAAATACTGGAAACCTCGTCTTGCTAGAAGACGCTACAGAGAAGACAATATGGGAGAGTTTCGAACATCCAACTGATGCATTCATTCCAAATATGATAATTAGCACCAACCAAAAAACAGGGCCAAAAGTAAAAACAACTTCTTGGGAAACAACTTCTGATCCTGCAATTGGAAACTTCTCTTTTAGCCTTGAGCGTCTCAACGCTCCAGAATTTTTTGTATGGAACGGAACAAAACCTTACTGGCGCTCGGGTCCATGGAATGGTCAAAAGTTTATCGGTTTACCTACTCATTCGGTGTATAATACTTCATATCTAAATGGATTCAACATTGCAAGGGAAGATAATGGAAGTCTTGTTGATATTACCTATACACTGCCTAATAGTTCTTACTTTGGAACCATGGTGGTGACTTATGAAGGAAAAACGGTTTACACTTTATGGATCAATAGGTATCTAGTAAGCAAGAGTGTTGCTCAAGAAAATGAATGTGATGTTTATGGTTTTTGTGGTCCTAATGGAAGTTGTGATTTGAAAAATTTGCCAATGTGTTCATGTTTGAAAGGTTTTGAGCCAAAAAACGCGGATGAATGGAATAAACAAAATTGGACTAGTGGTTGCGTGAGAAGCGCATCACTACGGTGTGGATTAGGTGGTGAAGGAGATGGATTTATGAAACTAGAGATGACAAAAGTACCAGATTTTGTGCAACAATCAGATCTTTCAGTTGATGCATGTAGAACTCAGTGTTTGAATGATTGTAATTGCACAGCTTATGGATTTGATGATGGAATAAGATGCTTGACTTGGAGTGGTAATTTAATTGACATAGTTATATTTTCAAGTGGAGGTATTGATCTTTACATACGCCTAGCTAATTCAGAATTTGATGGGAAGAAAAATGTAAAAAAAGTCATCATATCTGTGGTGGTGATAGTGGGAGCAATTATTCTTGCTACTTCTACTTATTTCTTACGGTCGCGGGCTTCTAAACGTTCAGAATCAGCAAAGTCATTGGTGTTGAATTCAAGCCAAATCCATCCAGAAAGCCAAAATGCAAATGTGAAACAAGTCAAAATAGAGGACCTTCCTTTATTTGAATTCCAGAAAATATCAACTGCAACAAATAATTTTAGTCCATCTAATAAGATTGGTCAAGGTGGTTTTGGTTCCGTGTACAAGGGAGAATTGCTAGGTGGACTAGAAATAGCAGTTAAAAGACTTTCAAGAGCTTCTGGACAAGGGCTAGAAGAATTTATGAATGAAGTGATTGTGATTTCAAAGCTTCAACATCGCAATCTTGTAAGACTTTTAGGTTGTTGCATTGAAGGAGAAGAAAAGATGTTGGTCTATGAGTATATGCCTAACAACAGTTTAGATTTTTATCTATTTGACTTGGTAAAAAAGAAGGTTTTAGATTGGAAAAAACGATTATACATAATTGAGGGAATCTCTCGAGGACTGCTTTATCTTCACAGAGATTCAAGATTAAGAATAATACACAGAGACCTAAAACCAAGTAATATCTTGTTGGATGGAGAATTGAATCCAAAAATATATGACTTTGGCATGGCCAGAATCTTTGGAGGTACCGAAAATGAGGGCAATACAAGAAGAATTGTGGGAACATATGGATACATGTCTCCAGAGAAAAACACAAGTTTCTATAATCACGATCAAGCACTTAGCCTCTTAGGATATGCATGGAAACTATGGAATGAAGAGGAGATTGTAACATTGATAGATCCAGAAATATGTAATCCAGATTATGTAGATGACATTTTGAGATGCATTCATATTGGACTTCTTTGTGTGCAAGAAATTGCAAAGGAGAGACCTACTATGGCAACAGTTGTTTCAGTGCTTAATAGTGAGATTGTTAAATTTCCTTGCCCATGTCAACCAGCATTCATTCAAAGACAGACTGAACAGAGAAGAGACATAGATCAACAATGTCACAACTTAAATTCTTTTAACAATGTCACTGTCACAAGCTTACAAGGCAGATAG 2379 0.364 MLLHILLTLLILYMIKIGSAAMYTITTSQLIKDSETISSNDDAFKFGFFSPANTTNRYVGIWYLEESNIIWVANREKPLTDFSGIVTISDDNTNLLVLNGQKHVIWSSNVSNFASNSNVTAHLQNTGNLVLLEDATEKTIWESFEHPTDAFIPNMIISTNQKTGPKVKTTSWETTSDPAIGNFSFSLERLNAPEFFVWNGTKPYWRSGPWNGQKFIGLPTHSVYNTSYLNGFNIAREDNGSLVDITYTLPNSSYFGTMVVTYEGKTVYTLWINRYLVSKSVAQENECDVYGFCGPNGSCDLKNLPMCSCLKGFEPKNADEWNKQNWTSGCVRSASLRCGLGGEGDGFMKLEMTKVPDFVQQSDLSVDACRTQCLNDCNCTAYGFDDGIRCLTWSGNLIDIVIFSSGGIDLYIRLANSEFDGKKNVKKVIISVVVIVGAIILATSTYFLRSRASKRSESAKSLVLNSSQIHPESQNANVKQVKIEDLPLFEFQKISTATNNFSPSNKIGQGGFGSVYKGELLGGLEIAVKRLSRASGQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLVYEYMPNNSLDFYLFDLVKKKVLDWKKRLYIIEGISRGLLYLHRDSRLRIIHRDLKPSNILLDGELNPKIYDFGMARIFGGTENEGNTRRIVGTYGYMSPEKNTSFYNHDQALSLLGYAWKLWNEEEIVTLIDPEICNPDYVDDILRCIHIGLLCVQEIAKERPTMATVVSVLNSEIVKFPCPCQPAFIQRQTEQRRDIDQQCHNLNSFNNVTVTSLQGR 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00371 792 SMART ntp_6 342 414 IPR003609 -
Trre4g00371 792 Pfam D-mannose binding lectin 69 172 IPR001480 -
Trre4g00371 792 Gene3D Phosphorylase Kinase; domain 1 462 576 - -
Trre4g00371 792 Pfam Protein kinase domain 504 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00371 792 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
Trre4g00371 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 144 - -
Trre4g00371 792 PIRSF SRK 673 792 IPR024171 GO:0004674
Trre4g00371 792 PIRSF SRK 1 674 IPR024171 GO:0004674
Trre4g00371 792 CDD PAN_AP_plant 336 415 - -
Trre4g00371 792 SUPERFAMILY Protein kinase-like (PK-like) 481 745 IPR011009 -
Trre4g00371 792 ProSiteProfiles Protein kinase domain profile. 501 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00371 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Trre4g00371 792 Pfam S-locus glycoprotein domain 205 317 IPR000858 GO:0048544
Trre4g00371 792 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Trre4g00371 792 Pfam PAN-like domain 342 400 IPR003609 -
Trre4g00371 792 SMART serkin_6 501 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00371 792 SMART blect_4 28 147 IPR001480 -
Trre4g00371 792 Gene3D Transferase(Phosphotransferase) domain 1 577 675 - -
Trre4g00371 792 Gene3D Transferase(Phosphotransferase) domain 1 676 752 - -
Trre4g00371 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 577 668 - -
Trre4g00371 792 CDD B_lectin 28 147 IPR001480 -
Trre4g00371 792 Gene3D - 18 144 IPR036426 -
Trre4g00371 792 ProSiteProfiles PAN/Apple domain profile. 338 415 IPR003609 -
Trre4g00371 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 212 IPR036426 -
Trre4g00371 792 CDD EGF_CA 285 317 - -
Trre4g00371 792 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 736 - -
Trre4g00371 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 465 576 - -
Trre4g00371 792 ProSiteProfiles Bulb-type lectin domain profile. 22 144 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00371 Trre-Chr4 2516535 2519887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00371 417 770 Receptor kinase-like Gene Family AT4G05200 45.953 2.31e-107 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g00371 Pkinase 1.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00371 - - mtr:11424236 1099.73