Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00370 ATGTTAGGACTCAATATTGGGCAAGGAAACATGTTACATATTTTATTCACTCTCTTAACCCTTTGTTGCACCATAATGAACATTGGTGGTGCTTCTGTGAACACAGTTACAAAGTCTCAAATATTGATCAAAGATTCTCAAACTCTAAGCTCTGACGACGGTGCATTCAAGCTTGGATTCTTCACCCCCATCAACACAACAAATCGCTACGTAGGAATATGGTATGTCTCTGAATCCAACGTCGTATGGGTAGCCAACAGAGAAACACCACTACATGATTCTTCTGGTGTTGTCACCATATCTGATGACAACACAAACCTTTTAGTATTGAATGGACAAAAACATATTATATGGTCGTCAAATGTATCAAATATTGCACCGAAGTTTAATGTCATCGTTCAACTTCAAAATACTGGAAATCTCGTCTTGCAGGAAGACACTACAGACAGGATAATATGGTCGAGTTTCAAACATCCAACCGATACATTCATTCCAAATATCATAATAAGCACAAACCAAATAACAGGAGAAAGAGTAGAAGCTACTTCATGGAAAAGTCCTTCTGATCCAGCTATTGGAAACTTTACCGGTGGCCTTGAGCGTCTGAGTGCTCCTGAAATTTTTATATGGAATCGAAAAAAACCTTCTTGGCGTTCAGGTCCATGGAATGGTCAAGCTTTTCTTGGATTGAGAACTAATTTGTTGTCTACTTCTGCATATCTAAATGGATTTACCTTTACAAGAGATAATAATGGAAGTCTTGTTGAGATTACATATACATTGCCAAATAGTTCTTACTTTGGAACCCTTGTGGTGGATTATGAAGGAAATCTTGTGTATACTGCATGGATCAATAGGATTCAAGTTAGGAAGCGGGTTGTTCAACAAAACGAATGCGATGTTTATGGTATTTGTGGTCCTAATGGAAGCTGTGATTTTAAAGATTCCGCGCCAATATGTACATGTTTGACAGGTTTTGAGCCAAAAAATGCGGACGAATGGAAAAGCCAAAATTGGATAAATGGGTGTGTGAGAAAGGCATCACTAAAGTGTGAGAGGGTGAAAAATAATAGGAGTGCATTAGATGGTGAAGAAGATGGGTTTATAAAACTACAGACGACAAAACCACCGGATTTTGTCGAGCAATCATATCTTTCTGAGGATGCATGTAGAACTCAGTGCTTGAATGATTGTAATTGCACAGCTTATGGATTTGACAATGGAATTCAGTGCTTGATTTGGAGTGGTAAATTAATCGACATAGTGAGGTTTACTAGTGGAGGCATCGATCTTTTCATACGCCAAGCTTATTCAGAACTTGCATCTATACAAACAAATGAGATTCATGGGAAGAAAAAGAAAAATGTTACACCAATCATCATAGCTACTGTGATAGTGGGTGCAATTATTGTTGCTACTTGTGCTTATTTCTTTTGGTCATGGGCTTCTAAACGTTCAGGGCAAACCCATCAAGAAAACCAAATTGCAAGTCTAAGTGGAAATATGAAACAAGTTAAAATAGAGGACCTTCCTTTATTTGAGTTCAAAAACATTTCAACTGCAACAAATAACTTTAGTTTAGCTAATAAGATTGGACATGGTGGTTTTGGTTCAGTGTACAAGGGAGAATTGCCAGATGGATTAGAAATAGCAGTGAAACGGCTTTCAAGAACATCAGGACAAGGTCTAGAAGAATTTATGAATGAAGTGATTGTGATTTCAAAGCTTCAACATCGCAATCTTGTAAGACTTTTAGGCTGCTGCATTGAAGGGGAAGAAAAGATGTTGGTCTATGAGTACATGCCTAATAACAGTTTAGATTTTTATCTATTTGACCCGGTAAAAAAGAAGATTTTAGATTGGCAAAAACGGCTATATATAATTCAAGGAATCTCTCGAGGGTTGCTTTATCTTCATAGAGATTCGAGATTGAGAATAATACACAGAGACCTAAAGCTGAGTAATATCTTGTTGGACGGAGAGCTGAACCCAAAAATATCTGACTTTGGCATGGCTAAAATCTTTGGAAGCAGCGAAAACGAGGGAAATACAAGAAGGATTATGGGAACATACGGATACATGTCTCCAGAATATGCAATGGAGGGATTGTTTTCAGAGAAATCAGATGTTTTTAGCTTTGGAGTTCTGCTCCTCGAGATAATAAGCGGTAGAAAAAACACAAGTTTCTATAATCACGATCAAGCACTTAGCCTCTTAGGATATGCATGGAAACTATGGAATGAAGAGGAGGCTGTATCTTTGATAGATCCAGAAATATGTAATCCAGATTATGTAGATGACATTTTGAGATGCATACATATTGGACTTCTTTGTGTTCAAGAAATTGCAAAGGAGAGGCCTACTATGGCCACTGTTGTTTCAATGCTTAACAGTGAGATTGTTAAATTTCCTCATCCATCTCAACCTGCATTCATTCAAAGGCAGACTGAGCATAAAGGAGAGTCATCTCAGTCTCAACAGAGTCATGACTCGAATTCGAGGAATGGTGTCACTATCACAAACTTGCAAGGCAGATAA 2538 0.3775 MLGLNIGQGNMLHILFTLLTLCCTIMNIGGASVNTVTKSQILIKDSQTLSSDDGAFKLGFFTPINTTNRYVGIWYVSESNVVWVANRETPLHDSSGVVTISDDNTNLLVLNGQKHIIWSSNVSNIAPKFNVIVQLQNTGNLVLQEDTTDRIIWSSFKHPTDTFIPNIIISTNQITGERVEATSWKSPSDPAIGNFTGGLERLSAPEIFIWNRKKPSWRSGPWNGQAFLGLRTNLLSTSAYLNGFTFTRDNNGSLVEITYTLPNSSYFGTLVVDYEGNLVYTAWINRIQVRKRVVQQNECDVYGICGPNGSCDFKDSAPICTCLTGFEPKNADEWKSQNWINGCVRKASLKCERVKNNRSALDGEEDGFIKLQTTKPPDFVEQSYLSEDACRTQCLNDCNCTAYGFDNGIQCLIWSGKLIDIVRFTSGGIDLFIRQAYSELASIQTNEIHGKKKKNVTPIIIATVIVGAIIVATCAYFFWSWASKRSGQTHQENQIASLSGNMKQVKIEDLPLFEFKNISTATNNFSLANKIGHGGFGSVYKGELPDGLEIAVKRLSRTSGQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLVYEYMPNNSLDFYLFDPVKKKILDWQKRLYIIQGISRGLLYLHRDSRLRIIHRDLKLSNILLDGELNPKISDFGMAKIFGSSENEGNTRRIMGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNTSFYNHDQALSLLGYAWKLWNEEEAVSLIDPEICNPDYVDDILRCIHIGLLCVQEIAKERPTMATVVSMLNSEIVKFPHPSQPAFIQRQTEHKGESSQSQQSHDSNSRNGVTITNLQGR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00370 845 ProSiteProfiles PAN/Apple domain profile. 351 436 IPR003609 -
Trre4g00370 845 SUPERFAMILY Protein kinase-like (PK-like) 508 796 IPR011009 -
Trre4g00370 845 SMART blect_4 40 159 IPR001480 -
Trre4g00370 845 Pfam PAN-like domain 364 421 IPR003609 -
Trre4g00370 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 29 156 - -
Trre4g00370 845 PIRSF SRK 8 845 IPR024171 GO:0004674
Trre4g00370 845 CDD B_lectin 42 159 IPR001480 -
Trre4g00370 845 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 787 - -
Trre4g00370 845 FunFam receptor-like serine/threonine-protein kinase SD1-8 498 600 - -
Trre4g00370 845 Gene3D - 31 157 IPR036426 -
Trre4g00370 845 Gene3D Transferase(Phosphotransferase) domain 1 601 805 - -
Trre4g00370 845 Pfam Protein tyrosine and serine/threonine kinase 527 796 IPR001245 GO:0004672|GO:0006468
Trre4g00370 845 SMART ntp_6 363 435 IPR003609 -
Trre4g00370 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 804 - -
Trre4g00370 845 Gene3D Phosphorylase Kinase; domain 1 483 600 - -
Trre4g00370 845 ProSiteProfiles EGF-like domain profile. 295 332 IPR000742 -
Trre4g00370 845 CDD PAN_AP_plant 362 434 - -
Trre4g00370 845 MobiDBLite consensus disorder prediction 813 845 - -
Trre4g00370 845 ProSiteProfiles Protein kinase domain profile. 525 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00370 845 CDD EGF_CA 297 330 - -
Trre4g00370 845 SMART serkin_6 525 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00370 845 CDD STKc_IRAK 531 797 - -
Trre4g00370 845 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Trre4g00370 845 ProSiteProfiles Bulb-type lectin domain profile. 34 156 IPR001480 -
Trre4g00370 845 Pfam D-mannose binding lectin 81 185 IPR001480 -
Trre4g00370 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Trre4g00370 845 Pfam S-locus glycoprotein domain 217 330 IPR000858 GO:0048544
Trre4g00370 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 190 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00370 Trre-Chr4 2509706 2513427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00370 452 835 Receptor kinase-like Gene Family AT4G05200 50.259 1.22e-129 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g00370 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00370 - - mtr:11424236 1243.8