Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00366 ATGAACATGGGTTGGAACTTCGACAAAAAAACCAAGAAACACTTAACATCATGGAAGATCACAGGTGAAGATCCTTCAAAAGGTGATTATTCATTCAAAATTGATTTTCATGGTTGGCCAGAGATTTTCCTACGGAATGATGAGATCATAATCTATCGAAGTGGACCATGGAATGGTGAAAGATTCGGTGGTGTACCGGTCATGGAACCCGATACAGATTCAACAGTTTTTTATTTTTCATCGAATGAACATGGTGTTAACTACTCGTTTTCGATCAGAAATCCATCAATTTTCTCGCGACTTGTTGTAAATTCGGCTGGTCTACTTCAACGTCGTACTTGGGTTAAAAGTACTAAAACTTGGACAACGTTTTGTGTTTGTGACACAAATGCTTCACCGGTTTGTCTATGTGTGGAAGGTTTTAGTCCTAAGAATGAACAAGCTTGGAAATTGAGAGATGTATCGGATGGGTGTGTGAGGAATACGAGTTTGGATTGTGAGAGTGATAAGTTTTATCATATGGAGAATGTGAAGTTGCCTGAAACAAGTTCTGTGTTTGTAAACAGGACAATGGGGATTAATGAATGTGGTGATTTGTGTCATAGGAATTGTTCTTGTACTGGTTATGCTAACATTTATGATGACGGAGGTGGTTGTGTTATGTGGTTTGGTGAACTTGTTGATATAAGAAGTTATTCTGATGGTGGACAAGATCTTTACATACGCCGTGCTTATCAAAAACTTGCTATAGATACAAATAGGAAAAGAAATGGTACAGCAATCACCATATCTACAGTGATAGTGGCAACCATTATTATTGCTGTTTGTACCTATTTCTTATGGTCATGGGCTTCTAAACGTTCAGCCGGTTCAGGGCAAACCCCTCAACAAAACCAAAGTGCAAGTCTAAGTGGAGATGTGAAACAAGTTAAAATAGAGGACCTTCCTTTATTTGAGTTCAAAAACATTTCAACTGCAACAAATAACTTTAGTTCAGCTAATAAGATTGGACAAGGTGGTTTTGGTTCGGTGTACAAGGGAGAATTGCCAGATGGATTAGAAATAGCAGTGAAAAGACTTTCAAGAACATCAGGACAAGGTCTAGAAGAATTTATGAATGAAGTGATCGTGATTTCAAAGCTTCAACATCGCAATCTTGTAAGACTTTTAGGTTGTTGCATTGAAGGAGAAGAAAAGATGTTGGTCTATGAGTACATGCCTAATAACAGTTTAGATTTTTATCTATTTGGTTAG 1254 0.3748 MNMGWNFDKKTKKHLTSWKITGEDPSKGDYSFKIDFHGWPEIFLRNDEIIIYRSGPWNGERFGGVPVMEPDTDSTVFYFSSNEHGVNYSFSIRNPSIFSRLVVNSAGLLQRRTWVKSTKTWTTFCVCDTNASPVCLCVEGFSPKNEQAWKLRDVSDGCVRNTSLDCESDKFYHMENVKLPETSSVFVNRTMGINECGDLCHRNCSCTGYANIYDDGGGCVMWFGELVDIRSYSDGGQDLYIRRAYQKLAIDTNRKRNGTAITISTVIVATIIIAVCTYFLWSWASKRSAGSGQTPQQNQSASLSGDVKQVKIEDLPLFEFKNISTATNNFSSANKIGQGGFGSVYKGELPDGLEIAVKRLSRTSGQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLVYEYMPNNSLDFYLFG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00366 417 ProSiteProfiles Protein kinase domain profile. 330 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00366 417 SMART ntp_6 166 243 IPR003609 -
Trre4g00366 417 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Trre4g00366 417 Pfam PAN-like domain 166 229 IPR003609 -
Trre4g00366 417 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 294 405 - -
Trre4g00366 417 Pfam S-locus glycoprotein domain 52 124 IPR000858 GO:0048544
Trre4g00366 417 ProSiteProfiles PAN/Apple domain profile. 166 244 IPR003609 -
Trre4g00366 417 Pfam Protein tyrosine and serine/threonine kinase 333 415 IPR001245 GO:0004672|GO:0006468
Trre4g00366 417 SUPERFAMILY Protein kinase-like (PK-like) 315 416 IPR011009 -
Trre4g00366 417 CDD PAN_AP_plant 162 242 - -
Trre4g00366 417 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 415 - -
Trre4g00366 417 Gene3D Phosphorylase Kinase; domain 1 290 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00366 Trre-Chr4 2481434 2483096 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00366 167 416 Receptor kinase-like Gene Family AT4G23320 38.113 1.13e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g00366 PK_Tyr_Ser-Thr 3.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00366 - - gmx:100797331 465.307