Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00365 ATGATGTTCACAACATGCCAACAACAAAGTTTACTTTTTTTGTTTTTGTTCTGTTTCCTCTGTTTCTGTTCTGTTTCCTCTGTTTCACCTTCACGTTTCAGAATCAAACATGGTGATATCATCAGAGACAAAGAAGGTGAAGTTTTAGCCTCTGATGGTTTCAACTTTGTAATGGGTTTTTTCGGTTTTCAAAACTCTTCTTCACGTTACGTTGGAATTTGGTATTACAACATTCCTGATTCTCAAGCTATTTGGGTTGCAAACAGAAACAAACCCATCAATGGAAACGGTGGTTCTTTCACTATATCAACAAATGGTAATTTAGTTATCTTAGATGAAAACAAAAATCAAATTTGGTCTACCAATGTTTCTATCACTCACAACAATAAGAATAACACTGAAGCTTTTCTTAGAGATGATGGTAATCTTGTTCTTTCAAATGAGAAAGTTGTTTTATGGCAAAGTTTTGAGAATCCATGTGATACTTATGTTCCTGGTATGAAAGTTCCTGTGAATGATAAAAAGAAGAGTTTTAGATTCACTTCATGGAAATCAAGTACAGATCCTTCAGAAGGGAATCATACTATGGGAGTTGATCCAGAAGGGTTACCACCACAGGTAGTAGTTTGGGAAGGAGAGAGAAGAAGATGGAGAAGTGGTTATTGGGATGGTAGAATTTTTAATGGTGTTGATATGACAGGTAGTTTTCTTCATGGTTTTGTGCTTAATTGGGATGGTAATGGTAGGTCTTTTGTTTATAATGATAATGAGTTTAAGGTAAATGGTTCTAGTTCAGTTAGGTTTCAGATTGGTTGGGATGGTATTGAAAGAGAGTTTCTATGGGATGAAAATGAGAAACGTTGGATTGAGATACAAAAAGGGCCTCATAATCAGTGTGAGTTTTATAACTATTGTGGTGATTTTGCTGCTTGTGAATTATCGGTTTCTTGTTCGGCTATTTGTAAATGCTTACGAGGGTTTGAGCAAAAGGATAAGAAGAATTGGTCAAGTGGGTGTAAGAGGATAACACCATTGAAGGGTGATCAGAGAAATGGGAGTGATACTCGGGCGAATAATGTTGGTGAAGACGGTTTCTTGGAGAGTAAATGTATGAAGTTACCTGATTTCGCAAATGTGATAGATACTAAGGATTGTGAAGATACTTGTTTGGGGAATGGTTCTTGTACTGCTTATGCAAAAGTTATTGGAATTGGTTGTATGATTTGGTATGGTGATTTGGTTGATGTTCAACACTTTAAAAGCGGTGGAAATACACTTCACATTCGTCTTGCGCATTCTGATTTAGGCGATGGAGGGAAACACAATAGGATTATGATTGTAATAATATCAGCTGTTCTAGCAGGACTAATCTGTCTAGGAATCATTGTATGCTTGGTATGGAGGTACAAGGGAAAACTCAAAGTTTTGCCTGCAGTTTCTTCAGCTTCATGTTGCAAAAATACTGACGTGCTACCGGTCTATGATGCACGTAAGAGCAGAGAGATGTCAGCAGAAATATCAGGACCAGTTGAACTTGGTTTGGAAGGAAATCAACTAAGCGGATCGGAGCTTCCCTTTTATAATTTCAGCTGCATGTCATTAGCCACCAACAATTTTTCTGAAGAAAATAAGCTCGGTCAAGGCGGTTTCGGTCCTGTGTACAAGGGTAAGCTTCCATCCGGAGAAGAAATAGCAGTCAAGAGGCTTTCTAGACGGTCCGGCCAAGGTTTAGAGGAGTTCAAAACTGAAATGATGCTGATTGCAAAACTACAACATAGAAATCTGGTTAGACTAATGGGATGTTCTATTCAAGGGGATGAAAAGTTGCTTGTATATGAATTTATGCCGAACAAAAGCTTGGATCGCTTTTTATTTGATCCTATCAAGCAAACACAATTAGACTGGGCGAGACGATATGAAATCATCGAAGGTATTGCAAGAGGACTACTTTATCTGCATCGCGATTCAAGACTCAGAATAATCCATCGAGACCTAAAAGCAAGCAACATTTTGTTAGATCAAAACATGAACCCGAAAATATCAGACTTTGGCTTGGCCCGAATATTCGGTGGAAACCAGCATGAAGCCAATACAGCTAGAGTGGTTGGTACATATGGTTATATGTCTCCTGAATATGCCATGGAAGGTCTATTTTCAGTCAAATCAGATGTATATAGTTTTGGCGTATTGCTACTAGAGATTTTGAGCGGCCGCAGAAACACTAGCTTTCGTCATTCAGATGATTCAAGTCTCATAGGATATGCGTGGAATCTTTGGAATGATCGCAGAGCAATGGAACTTGTTGATGCAAGCATTCGTGATTCGAGTCCTAAAAACAAAATATTGAGATGCATACAAATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCAAAGACCAAACATGTCGAACGTTGTGTTGATGCTTGAGAGTGAAGCAAAAACTCTTCCCATACCTACGCAGCCTTTGATTACTTCGATGAGATCAGAGGATAGAGAGTTTAACATGGATGGTCTTGATGTTTCAAATGATCTCACAGTAACAATGTTGGCAGGGAGATAG 2562 0.3845 MMFTTCQQQSLLFLFLFCFLCFCSVSSVSPSRFRIKHGDIIRDKEGEVLASDGFNFVMGFFGFQNSSSRYVGIWYYNIPDSQAIWVANRNKPINGNGGSFTISTNGNLVILDENKNQIWSTNVSITHNNKNNTEAFLRDDGNLVLSNEKVVLWQSFENPCDTYVPGMKVPVNDKKKSFRFTSWKSSTDPSEGNHTMGVDPEGLPPQVVVWEGERRRWRSGYWDGRIFNGVDMTGSFLHGFVLNWDGNGRSFVYNDNEFKVNGSSSVRFQIGWDGIEREFLWDENEKRWIEIQKGPHNQCEFYNYCGDFAACELSVSCSAICKCLRGFEQKDKKNWSSGCKRITPLKGDQRNGSDTRANNVGEDGFLESKCMKLPDFANVIDTKDCEDTCLGNGSCTAYAKVIGIGCMIWYGDLVDVQHFKSGGNTLHIRLAHSDLGDGGKHNRIMIVIISAVLAGLICLGIIVCLVWRYKGKLKVLPAVSSASCCKNTDVLPVYDARKSREMSAEISGPVELGLEGNQLSGSELPFYNFSCMSLATNNFSEENKLGQGGFGPVYKGKLPSGEEIAVKRLSRRSGQGLEEFKTEMMLIAKLQHRNLVRLMGCSIQGDEKLLVYEFMPNKSLDRFLFDPIKQTQLDWARRYEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDQNMNPKISDFGLARIFGGNQHEANTARVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWNLWNDRRAMELVDASIRDSSPKNKILRCIQIGMLCVQDSAAQRPNMSNVVLMLESEAKTLPIPTQPLITSMRSEDREFNMDGLDVSNDLTVTMLAGR 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00365 853 Pfam S-locus glycoprotein domain 217 330 IPR000858 GO:0048544
Trre4g00365 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Trre4g00365 853 CDD B_lectin 46 159 IPR001480 -
Trre4g00365 853 ProSiteProfiles Bulb-type lectin domain profile. 32 158 IPR001480 -
Trre4g00365 853 Pfam Protein tyrosine and serine/threonine kinase 542 807 IPR001245 GO:0004672|GO:0006468
Trre4g00365 853 Gene3D - 31 156 IPR036426 -
Trre4g00365 853 SUPERFAMILY Protein kinase-like (PK-like) 524 831 IPR011009 -
Trre4g00365 853 SMART ntp_6 360 430 IPR003609 -
Trre4g00365 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 156 - -
Trre4g00365 853 MobiDBLite consensus disorder prediction 182 203 - -
Trre4g00365 853 Pfam PAN-like domain 361 416 IPR003609 -
Trre4g00365 853 PIRSF SRK 4 853 IPR024171 GO:0004674
Trre4g00365 853 Pfam D-mannose binding lectin 84 184 IPR001480 -
Trre4g00365 853 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 800 - -
Trre4g00365 853 Gene3D Phosphorylase Kinase; domain 1 515 614 - -
Trre4g00365 853 ProSiteProfiles PAN/Apple domain profile. 360 431 IPR003609 -
Trre4g00365 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 507 614 - -
Trre4g00365 853 SMART blect_4 42 159 IPR001480 -
Trre4g00365 853 CDD PAN_AP_plant 358 431 - -
Trre4g00365 853 SMART serkin_6 539 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00365 853 CDD STKc_IRAK 545 810 - -
Trre4g00365 853 Gene3D Transferase(Phosphotransferase) domain 1 615 818 - -
Trre4g00365 853 ProSiteProfiles Protein kinase domain profile. 539 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00365 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 615 817 - -
Trre4g00365 853 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 189 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00365 Trre-Chr4 2476504 2479899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00365 513 822 Receptor kinase-like Gene Family AT4G23230 60.450 6.97e-130 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g00365 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00365 - - gmx:102660295 1229.16