Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00364 ATGATGTTCACAACATGCCAACAACAAAGTTTACTTTTTTTGTTTTTGTTCTGTTTCCTCTGTTTCTGTTCTGTTTCCTCTGTTTCACCTTCACGTTTCAGAATCAAACATGGTGATATCATCAGAGACAAAGAAGGTGAAGTTTTAGCCTCTGATGGTTTCAACTTTGTAATGGGTTTTTTCGGTTTTCAAAACTCTTCTTCACGTTACGTTGGAATTTGGTATTACAACATTCCTGATTCTCAAGCTATTTGGGTTGCAAACAGAAACAAACCCATCAATGGAAACGGTGGTTCTTTCACTATATCAACAAATGGTAATTTAGTTATCTTAGATGAAAACAAAAATCAAATTTGGTCTACCAATGTTTCTATCACTCACAACAATAAGAATAACACTGAAGCTTTTCTTAGAGATGATGGTAATCTTGTTCTTTCAAATGAGAAAGTTGTTTTATGGCAAAGTTTTGAGAATCCATGTGATACTTATGTTCCTGGTATGAAAGTTCCTGTGAATGATAAAAAGAAGAGTTTTAGATTCACTTCATGGAAATCAAGTACAGATCCTTCAGAAGGGAATCATACTATGGGAGTTGATCCAGAAGGGTTACCACCACAGGTAGTAGTTTGGGAAGGAGAGAGAAGAAGATGGAGAAGTGGTTATTGGGATGGTAGAATTTTTAATGGTGTTGATATGACAGGTAGTTTTCTTCATGGTTTTGTGCTTAATTGGGATGGTAATGGTAGGTCTTTTGTTTATAATGATAATGAGTTTAAGGTAAATGGTTCTAGTTCAGTTAGGTTTCAGATTGGTTGGGATGGTATTGAAAGAGAGTTTCTATGGGATGAAAATGAGAAACGTTGGATTGAGATACAAAAAGGGCCTCATAATCAGTGTGAGTTTTATAACTATTGTGGTGATTTTGCTGCTTGTGAATTATCGGTTTCTTGTTCGGCTATTTGTAAATGCTTACGAGGGTTTGAGCAAAAGGATAAGAAGAATTGGTCAAGTGGGTGTAAGAGGATAACACCATTGAAGGGTGATCAGAGAAATGGGAGTGATACTCGGGCGAATAATGTTGGTGAAGACGGTTTCTTGGAGAGTAAATGTATGAAGTTACCTGATTTCGCAAATGTGATAGATACTAAGGATTGTGAAGATACTTGTTTGGGGAATGGTTCTTGTACTGCTTATGCAAAAGTTATTGGAATTGGTTGTATGATTTGGTATGGTGATTTGGTTGATGTTCAACACTTTAAAAGCGGTGGAAATACACTTCACATTCGTCTTGCGCATTCTGATTTAGGCGATGGAGGGAAACACAATAGGATTATGATTGTAATAATATCAGCTGTTCTAGCAGGACTAATCTGTCTAGGAATCATTGTATGCTTGGTATGGAGGTACAAGGGAAAACTCAAAGCTTCATGTTGCAAAAATACTGACGTGCTACCGGTCTATGATGCACGTAAGAGCAGAGAGATGTCAGCAGAAATATCAGGACCAGTTGAACTTGGTTTGGAAGGAAATCAACTAAGCGGATCGGAGCTTCCCTTTTATAATTTCAGCTGCATGTCATTAGCCACCAACAATTTTTCTGAAGAAAATAAGCTCGGTCAAGGCGGTTTCGGTCCTGTGTACAAGGGTAAGCTTCCATCCGGAGAAGAAATAGCAGTCAAGAGGCTTTCTAGACGGTCCGGCCAAGGTTTAGAGGAGTTCAAAACTGAAATGATGCTGATTGCAAAACTACAACATAGAAATCTGGTTAGACTAATGGGATGTTCTATTCAAGGGGATGAAAAGTTGCTTGTATATGAATTTATGCCGAACAAAAGCTTGGATCGCTTTTTATTTGATCCTATCAAGCAAACACAATTAGACTGGGCGAGACGATATGAAATCATCGAAGGTATTGCAAGAGGACTACTTTATCTGCATCGCGATTCAAGACTCAGAATAATCCATCGAGACCTAAAAGCAAGCAACATTTTGTTAGATCAAAACATGAACCCGAAAATATCAGACTTTGGCTTGGCCCGAATATTCGGTGGAAACCAGCATGAAGCCAATACAGCTAGAGTGGTTGGTACATATGGTTATATGTCTCCTGAATATGCCATGGAAGGTCTATTTTCAGTCAAATCAGATGTATATAGTTTTGGCGTATTGCTACTAGAGATTTTGAGCGGCCGCAGAAACACTAGCTTTCGTCATTCAGATGATTCAAGTCTCATAGGATATGCGTGGAATCTTTGGAATGATCGCAGAGCAATGGAACTTGTTGATGCAAGCATTCGTGATTCGAGTCCTAAAAACAAAATATTGAGATGCATACAAATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCAAAGACCAAACATGTCGAACGTTGTGTTGATGCTTGAGAGTGAAGCAAAAACTCTTCCCATACCTACGCAGCCTTTGATTACTTCGATGAGATCAGAGGATAGAGAGTTTAACATGGATGGTCTTGATGTTTCAAATGATCTCACAGTAACAATGTTGGCAGGGAGATAG 2541 0.3841 MMFTTCQQQSLLFLFLFCFLCFCSVSSVSPSRFRIKHGDIIRDKEGEVLASDGFNFVMGFFGFQNSSSRYVGIWYYNIPDSQAIWVANRNKPINGNGGSFTISTNGNLVILDENKNQIWSTNVSITHNNKNNTEAFLRDDGNLVLSNEKVVLWQSFENPCDTYVPGMKVPVNDKKKSFRFTSWKSSTDPSEGNHTMGVDPEGLPPQVVVWEGERRRWRSGYWDGRIFNGVDMTGSFLHGFVLNWDGNGRSFVYNDNEFKVNGSSSVRFQIGWDGIEREFLWDENEKRWIEIQKGPHNQCEFYNYCGDFAACELSVSCSAICKCLRGFEQKDKKNWSSGCKRITPLKGDQRNGSDTRANNVGEDGFLESKCMKLPDFANVIDTKDCEDTCLGNGSCTAYAKVIGIGCMIWYGDLVDVQHFKSGGNTLHIRLAHSDLGDGGKHNRIMIVIISAVLAGLICLGIIVCLVWRYKGKLKASCCKNTDVLPVYDARKSREMSAEISGPVELGLEGNQLSGSELPFYNFSCMSLATNNFSEENKLGQGGFGPVYKGKLPSGEEIAVKRLSRRSGQGLEEFKTEMMLIAKLQHRNLVRLMGCSIQGDEKLLVYEFMPNKSLDRFLFDPIKQTQLDWARRYEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDQNMNPKISDFGLARIFGGNQHEANTARVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWNLWNDRRAMELVDASIRDSSPKNKILRCIQIGMLCVQDSAAQRPNMSNVVLMLESEAKTLPIPTQPLITSMRSEDREFNMDGLDVSNDLTVTMLAGR 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00364 846 CDD B_lectin 46 159 IPR001480 -
Trre4g00364 846 CDD STKc_IRAK 538 803 - -
Trre4g00364 846 SUPERFAMILY Protein kinase-like (PK-like) 517 824 IPR011009 -
Trre4g00364 846 Pfam D-mannose binding lectin 84 184 IPR001480 -
Trre4g00364 846 Pfam Protein tyrosine and serine/threonine kinase 535 800 IPR001245 GO:0004672|GO:0006468
Trre4g00364 846 ProSiteProfiles Bulb-type lectin domain profile. 32 158 IPR001480 -
Trre4g00364 846 Gene3D - 31 156 IPR036426 -
Trre4g00364 846 ProSiteProfiles Protein kinase domain profile. 532 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00364 846 SMART ntp_6 360 430 IPR003609 -
Trre4g00364 846 MobiDBLite consensus disorder prediction 182 203 - -
Trre4g00364 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 793 - -
Trre4g00364 846 Pfam PAN-like domain 361 416 IPR003609 -
Trre4g00364 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 156 - -
Trre4g00364 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 500 607 - -
Trre4g00364 846 Gene3D Transferase(Phosphotransferase) domain 1 608 811 - -
Trre4g00364 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 189 IPR036426 -
Trre4g00364 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Trre4g00364 846 ProSiteProfiles PAN/Apple domain profile. 360 431 IPR003609 -
Trre4g00364 846 PIRSF SRK 4 846 IPR024171 GO:0004674
Trre4g00364 846 Gene3D Phosphorylase Kinase; domain 1 508 607 - -
Trre4g00364 846 SMART blect_4 42 159 IPR001480 -
Trre4g00364 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 608 810 - -
Trre4g00364 846 CDD PAN_AP_plant 358 431 - -
Trre4g00364 846 Pfam S-locus glycoprotein domain 217 330 IPR000858 GO:0048544
Trre4g00364 846 SMART serkin_6 532 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00364 Trre-Chr4 2476504 2479899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00364 450 815 Receptor kinase-like Gene Family AT4G23230 54.891 4.00e-130 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g00364 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00364 - - gmx:102660295 1211.82