Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00360 ATGGATGGAGAGAATCATGATTCTTATGGTTACATATGGCAAAGTTTTGATTATCCAACAGATACAATGTTACCTGGCATGAAGTTGGGTTGGGATAAGAATTCGAGTATTGATAGATATTTGACGTCGTGGAAGAATGACGATGATGACCCTTCTTATGGAAATTTTACTTACAGGTTTGATTACAAAGAGTTTCCTGAGTTGGTGATTCGTCAAGGAAAGAATATCACATTCAGAAGTGGGATTTGGAATGGAGTTCGTTTTAACTATGATGATTGGATATCGTTGAGAGGAGTTACAGCCTTCACGCCACAACTTTCAGTAACAAACGACGAGGTAGTGTACTGGGATGAACCTGGAGATAAATTGTCGAGGTTTATGATGAGGGATGATGGATTGTTGGAAAGATATATATGGGACAATAAGATTGTTAAGTGGACTAAAATGTATGAGGCAAGAAAAGATTTTTGTGATAACTATGGAGCATGTGGGATAAATGGTGTTTGCAATATCGATGATGTGCCTGTTTATTGTGATTGTTTGAAAGGCTTCAAACCTCGATCACAAGACGAATGGGATTTTTTTAATCGTTCCGGTGGGTGTATTAGGAAAATACCTTTGAACTGCACACAAGCTGACAGGTTTCAGAAATTAAGCAGGGTGAAATTGCCTATGTTGTTGCAGTTCTGGACAAATAGTAGCATGAGTCTTGAAGAATGTGAGGTCGAGTGCTTGAAGAATTGTTCTTGCACTGCATATGCAAACTCTGTCATAAATGAAGGGCCTCATGGTTGCTTGATTTGGTTTGGTGACTTGATTGATATTAGGTTGCTTATAAATGAAGATAGTGCACAACTTGAGCTTTATGTAAGGTTAGCTGCTTCAGAAATAGATTCCACCACTAGTGCTAGTAAAAGGAGAAAGATAGCACTGATTGTTTCAGCATCCATGGCAGTGTTTGTTTTGTGTATCGTTTTCTACCTTTGCAAGAAGTATGTTACAGTAAGAAAACGACGGAAGGCCACTGCTAATTTGGGACAGCGAGACCAGAATGAAGAACAAGCGTCGCCTCTTTTTGATATAGATATCATTCTAGCTGCTACAAACAGTTTTTCTATCGAGAACAAGATTGGCGAAGGAGGTTTTGGACCAGTGTACAAGGGTATATTGGCTCAAGGACAAGAAATAGCTGTGAAAAGGCTATCGAAAACTTCAAAACAAGGAGTCACAGAGTTCATGAATGAAGTTGGATTGGTAGCTAAGCTACAACACCGCAATCTTGTGAGTGTTTTGGGAGGGTGTACTTACGGAAATGAAAGAATATTGGTCTATGAATTCATGCCTAATGGTAGTTTGAACCACTTCATTTTTGATCCTACACAAGGGAAATTTTTGCAGTGGAGGAAGCGATATGATATTATTACGGGAGTTGCTCGAGGACTACTTTATCTTCATCAAGATTCAAAACTAACCATCATTCATAGGGATCTGAAAACTAGTAATATTCTACTTGACAGTGAATTGAACCCCAAGATATCTGATTTTGGTGTGTCACACATCTTGAAAGGAGGTAGTTCAGCTGTAACAACGAATACAATTGTCGGGACAATTGGTTATATGTCTCCCGAGTATGCGGTAAATGGACTCCTTTCCCTCAAGTCTGATGTATTTAGCTTTGGTGTTATAGTGTTAGAGATATTGAGTGGCATGAAAAATAATCACTTCAAGAATCAAGATCATCCCCATAATCTCTTAGGACAGGCATGGATATTATGGAAAGAAGGGCGACCATTGGAATTCATGGATGCTAATATGGACCTTACAAGCATCCCTTATGAAATACTAAGGTGCCTACAAATTGGTCTCTTGTGTGTTCAGAAGTTTCCCGAAGACAGACCAGATATGTCTTCTGTGGTTTTTATGTTAGGCAATGAAAGTATTGCACTTGCACAACCAAACAAGCCTGGCTTCTTTTCAGATGAGATAGAGTTTCATGATTATAGTGAGAAAGACTCTTTTAGCAACAATGCTGTGACTATTACGATATTGGAAGCACGGAATTAG 2064 0.3881 MDGENHDSYGYIWQSFDYPTDTMLPGMKLGWDKNSSIDRYLTSWKNDDDDPSYGNFTYRFDYKEFPELVIRQGKNITFRSGIWNGVRFNYDDWISLRGVTAFTPQLSVTNDEVVYWDEPGDKLSRFMMRDDGLLERYIWDNKIVKWTKMYEARKDFCDNYGACGINGVCNIDDVPVYCDCLKGFKPRSQDEWDFFNRSGGCIRKIPLNCTQADRFQKLSRVKLPMLLQFWTNSSMSLEECEVECLKNCSCTAYANSVINEGPHGCLIWFGDLIDIRLLINEDSAQLELYVRLAASEIDSTTSASKRRKIALIVSASMAVFVLCIVFYLCKKYVTVRKRRKATANLGQRDQNEEQASPLFDIDIILAATNSFSIENKIGEGGFGPVYKGILAQGQEIAVKRLSKTSKQGVTEFMNEVGLVAKLQHRNLVSVLGGCTYGNERILVYEFMPNGSLNHFIFDPTQGKFLQWRKRYDIITGVARGLLYLHQDSKLTIIHRDLKTSNILLDSELNPKISDFGVSHILKGGSSAVTTNTIVGTIGYMSPEYAVNGLLSLKSDVFSFGVIVLEILSGMKNNHFKNQDHPHNLLGQAWILWKEGRPLEFMDANMDLTSIPYEILRCLQIGLLCVQKFPEDRPDMSSVVFMLGNESIALAQPNKPGFFSDEIEFHDYSEKDSFSNNAVTITILEARN 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00360 687 Gene3D Phosphorylase Kinase; domain 1 331 446 - -
Trre4g00360 687 Pfam Protein kinase domain 372 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00360 687 Pfam PAN-like domain 209 275 IPR003609 -
Trre4g00360 687 Pfam S-locus glycoprotein domain 78 187 IPR000858 GO:0048544
Trre4g00360 687 SUPERFAMILY alpha-D-mannose-specific plant lectins 8 85 IPR036426 -
Trre4g00360 687 CDD STKc_IRAK 377 642 - -
Trre4g00360 687 SMART ntp_6 210 292 IPR003609 -
Trre4g00360 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 447 650 - -
Trre4g00360 687 SUPERFAMILY alpha-D-mannose-specific plant lectins 9 49 IPR036426 -
Trre4g00360 687 Gene3D Transferase(Phosphotransferase) domain 1 447 653 - -
Trre4g00360 687 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 665 - -
Trre4g00360 687 ProSiteProfiles Protein kinase domain profile. 371 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00360 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Trre4g00360 687 ProSiteProfiles PAN/Apple domain profile. 209 293 IPR003609 -
Trre4g00360 687 SUPERFAMILY Protein kinase-like (PK-like) 355 642 IPR011009 -
Trre4g00360 687 SMART serkin_6 371 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00360 687 CDD PAN_AP_plant 206 293 - -
Trre4g00360 687 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 446 - -
Trre4g00360 687 Pfam D-mannose binding lectin 6 45 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00360 Trre-Chr4 2434409 2437059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00360 291 659 Receptor kinase-like Gene Family AT4G38830 51.200 8.22e-114 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g00360 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00360 - - gmx:102669607 1105.51