Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00355 ATGAAAAGTTCCACTATTGTAAAACTCCATCTAAACTTTATTTTATGTATATGCTTTTTCAATATTGTAATCTCTAATGATACATTAAATGTAACACAGTCTCTAGGATTCAACCAAACACTTGTATCTCCACAAAAAGTGTTTGAGTTTGGTTTCTTTAACACAAGCACTTCAAAATGGTACATAGGTATATGGTACAAAGATTTTCCAGATAAAACATTTGTTTGGGTGGCAAATAGAAACACTCCACTTGAAAATTCTAATGGAACTGTCAAGATTGATGGTGGAAACTTGGTTCTTTATAACCAAACAGATAGTCTCATATGGTCAACAAATCAAACTTTTTCATCTGTTTCAAATCCTGTTCTTCATCTTTTGGATGATGGCAATTTGGTTCTCAAAGAAGTACAAGAGAAAAATACTTCAAACTATATATGGCAGAGTTTTGATCATCCAACAGATACTTTGTTACCGGGTATGAAACTTGGTTGGAACCTTGATACTCGTGTTGAGATTCGAATAACTTCGTGGAAAAGTCAAGATGATCCATCAAGTGGAGATGGTTATTTTAGTCTTGATTATCATGGTGTTCCAGATATTTACTTGTGGAACAAGCAACAAAGGGTGTTTAGAACTGGTTCATGGAATGGTGAAACTTTTGGTGGAGTACCAATACTAAATACAATAGCTATTCTTAATGATAAAATAGTTGTTGATGATCATCAAGCTTATTACTATCCTGCAAAGCTATTTCAGTCTAATTTGTCTAGACTTGTAGTGAATTGGACCGGTGAAATCGAACGTTATGCATGGATCGAAAGCACTAAAATTTGGAGCTTAACATGGAATGCACCAGCTGTAGATTGTGATCATTATGGAAAATGTGGTCCTTTTGGTATCTGTGACTCAAATGCTTTTCCTATATGCAAGTGTGTGACAGGATTCAATGTCAAGAATCAGAGGCAATGGGATTTGAGAAATTTTTCTGATGGTTGTGTGAGGAAAACAGAATTGGAATGTGGAAAGGATAAGTTCTTGCAATTGAAGCATGTGCAATTACCAGATACTAGAAGTGTGTTTGTGAACAAGAGTATGACTTTATCGGAATGCGAAAATATGTGCCTCAAAGATTGTTCTTGCACTGCCTATACTAATGAAGTGATTACTAATGGTGGGACTGGTTGTGTTATGTGGAATTATAGTCTTGTAGATATGAGACAGTTTTCTGAAGATGGACAAGATCTCTTTATCAGATTAGCAGCTTCTGATGTAGGTGACAAAGACTCTTCTGGTGGCTCCAAAAAGAATGGAGGAAAGATTGCTGGAATTACAATTGCTATAGCTATCCTTGTATTGGGAGTGATTATATTCATTTTGTGGAAGAGAAGAAAATCACAAAGAATACAGATAGTGAATACTAATAAGAGAGCTAATTCTAATAGAGGTCAAAAAGCACTGTTACCTGAGGTGATGTTATCAAATAACAGAGAATATTCAGATGAAAGGAACATGGATGACCTTGATTTGCCACTGTTTGATTTTCATGTCATATCAGATGCTACAAACTCCTTCTCTTTAGCAAATAAACTTGGTGAAGGAGGCTTTGGAACTGTTTATAGGGGTAGGCTGGTTGATGGCTCGGAAATTGCTGTTAAGAGGTTGTCAACAAGCTCTGGACAAGGAAATGTAGAATTCCAGAATGAGGTAAGATCAATTGCAAAGCTTCAACATCGAAATCTTGTACGACTCTTCGGTTGCTGCATTCAGAAAGAAGAGAAGATGTTGATCTATGAGTACATGGAAAATAACAGCCTAGAGTCTATTTTATTTGACAAAGCAAAGAGTTCCATGCTAGATTGGCCAATGAGGTTCAATATCATATGTGGAATAGCCAAAGGGCTTCTTTATCTCCACCATGATTCAAGATTTAGAATTATTCATAGAGATCTAAAGGCAAGCAATGTTCTACTTGATAGAGAAATGAATCCAAAGATATCAGATTTTGGGATTGCTAGAATTTTTGACAATGATCAAACACACTCTAATACAATGAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCAATGGGTGGATACTTTTCGGCGAAATCAGATGTTTTCAGTTTTGGTGTTCTCGTGTTAGAGATCATAAGCGGCATGAAGAATAGAGGATTTCATATATCAGATGATCTAAATCTTCTTGGACATGCATGGAGGCTATGGAATGAAGGGAAAGCAATGGAAATAATAGATTCATCAATTGCAGATTCATATTCAGAATCTGAAGTTCTAAGATGCATAAATGTGGGCCTAATATGTGTCCAAGAAAAAATAGAAGACAGACCCATAATGCCTTCAGTGGTAATGATGTTGAATAGGGAAACACCATTGCCACAACCAAAGCACCCCGGATTCGTCCTTGGAAGGAATCCAGGTGAATCTGATTCATCTTCGGCTAGGCAAGACGAATCACACTCGATAAACCAAGTCACAGTTACAATAGTAAATGGAAGGTAG 2526 0.3634 MKSSTIVKLHLNFILCICFFNIVISNDTLNVTQSLGFNQTLVSPQKVFEFGFFNTSTSKWYIGIWYKDFPDKTFVWVANRNTPLENSNGTVKIDGGNLVLYNQTDSLIWSTNQTFSSVSNPVLHLLDDGNLVLKEVQEKNTSNYIWQSFDHPTDTLLPGMKLGWNLDTRVEIRITSWKSQDDPSSGDGYFSLDYHGVPDIYLWNKQQRVFRTGSWNGETFGGVPILNTIAILNDKIVVDDHQAYYYPAKLFQSNLSRLVVNWTGEIERYAWIESTKIWSLTWNAPAVDCDHYGKCGPFGICDSNAFPICKCVTGFNVKNQRQWDLRNFSDGCVRKTELECGKDKFLQLKHVQLPDTRSVFVNKSMTLSECENMCLKDCSCTAYTNEVITNGGTGCVMWNYSLVDMRQFSEDGQDLFIRLAASDVGDKDSSGGSKKNGGKIAGITIAIAILVLGVIIFILWKRRKSQRIQIVNTNKRANSNRGQKALLPEVMLSNNREYSDERNMDDLDLPLFDFHVISDATNSFSLANKLGEGGFGTVYRGRLVDGSEIAVKRLSTSSGQGNVEFQNEVRSIAKLQHRNLVRLFGCCIQKEEKMLIYEYMENNSLESILFDKAKSSMLDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNVLLDREMNPKISDFGIARIFDNDQTHSNTMRVVGTYGYMSPEYAMGGYFSAKSDVFSFGVLVLEIISGMKNRGFHISDDLNLLGHAWRLWNEGKAMEIIDSSIADSYSESEVLRCINVGLICVQEKIEDRPIMPSVVMMLNRETPLPQPKHPGFVLGRNPGESDSSSARQDESHSINQVTVTIVNGR 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00355 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 802 - -
Trre4g00355 841 Gene3D Transferase(Phosphotransferase) domain 1 600 800 - -
Trre4g00355 841 SUPERFAMILY Protein kinase-like (PK-like) 508 794 IPR011009 -
Trre4g00355 841 CDD STKc_IRAK 530 796 - -
Trre4g00355 841 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 489 599 - -
Trre4g00355 841 CDD PAN_AP_plant 336 420 - -
Trre4g00355 841 MobiDBLite consensus disorder prediction 814 833 - -
Trre4g00355 841 Gene3D - 21 150 IPR036426 -
Trre4g00355 841 Pfam D-mannose binding lectin 73 178 IPR001480 -
Trre4g00355 841 SMART blect_4 32 152 IPR001480 -
Trre4g00355 841 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Trre4g00355 841 ProSiteProfiles Bulb-type lectin domain profile. 26 146 IPR001480 -
Trre4g00355 841 Pfam Domain of unknown function (DUF3403) 797 841 IPR021820 GO:0004674
Trre4g00355 841 Pfam PAN-like domain 340 405 IPR003609 -
Trre4g00355 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Trre4g00355 841 Gene3D Phosphorylase Kinase; domain 1 489 599 - -
Trre4g00355 841 FunFam Receptor-like serine/threonine-protein kinase SD1-8 21 149 - -
Trre4g00355 841 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 785 - -
Trre4g00355 841 Pfam Protein tyrosine and serine/threonine kinase 526 741 IPR001245 GO:0004672|GO:0006468
Trre4g00355 841 ProSiteProfiles PAN/Apple domain profile. 340 420 IPR003609 -
Trre4g00355 841 MobiDBLite consensus disorder prediction 802 833 - -
Trre4g00355 841 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544
Trre4g00355 841 ProSiteProfiles Protein kinase domain profile. 524 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00355 841 SMART ntp_6 340 419 IPR003609 -
Trre4g00355 841 PIRSF SRK 1 841 IPR024171 GO:0004674
Trre4g00355 841 CDD B_lectin 32 152 IPR001480 -
Trre4g00355 841 SMART serkin_6 524 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00355 841 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00355 Trre-Chr4 2429219 2432427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00355 424 808 Receptor kinase-like Gene Family AT4G23190 49.242 4.02e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g00355 PK_Tyr_Ser-Thr 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00355 - - aip:107621503 1083.17