Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00354 ATGGAGAAAACAGAGTTCACCCTTCTATTTCTTGCTACTTGTTTTTTCCATTTAACAACTATGTTTCCAAAATCTTCAAAAGCAGAAGATATCATAACTCCACCACAAATTATCACTTGCAACCAAACACTAATTTCACCTTCACAGAATTTTGAACTTGGTTTTTTCACTCCTAACAATTCCACTTACACATATCTTGGAATATGGTATAAGCAAATTCACAAAAAGACTATTGTTTGGGTTGCAAATAGAGACAAACCACTTCTTAACCATAATGGTTCATTAACATTCAACAATGATGGAAAACTCATTATTCTCAACCACAAAGGGAGTGTTCTATGGTCCTCAAATTCATCTGGGCCAGCAAAAAATCCAGTAGCACAGCTTCTAGATTCTGGAAACTTTGTTTTGAAGAACTTTGTAGATGAAAACTCTGAAGAATTTTTATGGCAAAGTTTTGATTACCCTTCTGATACATTGTTACCAGGAATGAAAATTGGTTGGAACTTCAAAACTGGTTTGAACATTCATTTGAGTTCTTGGAGAAACAGTGATGATCCTTCTTCAGGTGAATATAGTTATAGCGTTGATCCGCGAGGACTTCCTCAGCTTTTTCTTCAGAAGGGTAAGAAGAAAATTTTCAGAAGTGGACCATGGTATGTGGAAAAATACAAAGGTGATCCAGTTCTAAGGGAAAATCCAGTTTTCAAACCGGTTTTCGTTTTTGATTCTGATGAAGTGTATTACTCTTATGAGACAAAAGACAACATTGTTTCAATGTTTGTGCTTAGTGAATCTGGTTTGATTCAGCATTTCACATGGAACGATCATCGTTCGAGTTGGTTTTCTGAGTTTAATATTCAAGGCGATCAATGTGATGATTATGGTATTTGTGGTACATATGGAACTTGTAACATTAAAAGCTCTCCTATTTGTAAGTGTTTGGAGGGTTTTGAACCAAGGATTATGCATGAATGGAAAATGCTTGATTGGTCTAGTGGATGTGTCAGGAAGAATTCAAATGCTTGTAGAAATGGAGATGTATTTAAGAAGTTCACAGGAATGAAACTGCCAGATTCTGTTGAGTTTCATGTAAACTATAGTATTAACATTGATCAATGTGAAGTGGAATGCTCTACGAACTGTTCCTGTGTTGCATATGCAAAACTTGATATAAATGCTAGTGGTAATGGTTGTATTGCTTGGTTTGGAGATTTATTTGATATAAGAGAGGATTCTTTTAATGGCCAAGATTTTTATGTGAGAGTTTCAGCTTCAAAACTAGATTCAAATGTTGACAAAAACAAAAGCAAGATACTCATAATACTTCCTGTGAGTATATTAGTAGCCTCAACTATCATTGTCTCAGCATTGTGGTTGATAATTAAGAAATGGAGAAGAAATAGAGCTGAAGAGACAGATATTCAATTTAGTGTTGGCACAACTAAGAATGAGTTTGAACTCCCATTTTTTGAGATAGCTATTATTGAAGATGCAACAAGGAATTTCTCTTTTAACAATAAGATTGGAGAAGGTGGATTTGGTCCTGTATACAAAGGCCAACTTCCATCAGGACGCGAAATAGCGGTGAAAAGACTCTCAGAGAATTCTGGACAAGGCCTGCAAGAATTCAAGAATGAGGTTATTTTCATCTCTCAACTTCAACATCGAAATCTCGTCAAGCTTCTTGGTTGTTGCATTCAAGGAGAAGATAAAATGTTGATCTATGAATACATGCCAAATAGAAGCTTGGACTCCTTATTATTCGATGAAACGAAGCGCTCGGCGCTTAGTTGGGAAAAGAGGCTAGACATTATTAACGGCATTGCTAGGGGACTTGTCTACCTTCACAGAGATTCGAGATTAAGAATAATTCATAGAGATCTAAAAGCAAGCAATGTTCTTTTAGATGGTGACATGAATCCAAAAATTTCTGACTTTGGAATGGCAAGAATATTTGGTGGAGATCAAACTGAAGAAAAGACCAAAAGGGCAGTCGGAACATATGGATATATGCCTCCAGAGTATGCAATGGATGGACATTTCTCTTTCAAATCTGATGTTTATAGCTTTGGAGTTTTACTTTTGGAGTTGTTAAGTGGCAAGAAAAACAAAGGGTTTTTTCACCCTGATCACAAATTGAATCTCCTAGGCCATGCATGGAAGCTTTGGCATGAAAATAGGGTCATTGAGTTAATTGATCCATTACTTGAGGATCAAGTTACTACCCTTGAATCAATTTTAAAGTGTATTCAAATTGGTCTTTTATGTGTTCAACAACATCCAGAAGAAAGACCAACAATGTCATCAGTAGTTTTGATGTTGGATGGTGAAAGTGTGTTGGTCCCTAAACCTAGAAGACCAGGTTTGTATTCAGAGAGATGTTTCTTAGATACAGATTCATCATCACGTGGTATGCTCAATTCTGGTTCCAATGACATAACTGTTACCACTACTTTAGTAGAAGGTCGTTAA 2475 0.36 MEKTEFTLLFLATCFFHLTTMFPKSSKAEDIITPPQIITCNQTLISPSQNFELGFFTPNNSTYTYLGIWYKQIHKKTIVWVANRDKPLLNHNGSLTFNNDGKLIILNHKGSVLWSSNSSGPAKNPVAQLLDSGNFVLKNFVDENSEEFLWQSFDYPSDTLLPGMKIGWNFKTGLNIHLSSWRNSDDPSSGEYSYSVDPRGLPQLFLQKGKKKIFRSGPWYVEKYKGDPVLRENPVFKPVFVFDSDEVYYSYETKDNIVSMFVLSESGLIQHFTWNDHRSSWFSEFNIQGDQCDDYGICGTYGTCNIKSSPICKCLEGFEPRIMHEWKMLDWSSGCVRKNSNACRNGDVFKKFTGMKLPDSVEFHVNYSINIDQCEVECSTNCSCVAYAKLDINASGNGCIAWFGDLFDIREDSFNGQDFYVRVSASKLDSNVDKNKSKILIILPVSILVASTIIVSALWLIIKKWRRNRAEETDIQFSVGTTKNEFELPFFEIAIIEDATRNFSFNNKIGEGGFGPVYKGQLPSGREIAVKRLSENSGQGLQEFKNEVIFISQLQHRNLVKLLGCCIQGEDKMLIYEYMPNRSLDSLLFDETKRSALSWEKRLDIINGIARGLVYLHRDSRLRIIHRDLKASNVLLDGDMNPKISDFGMARIFGGDQTEEKTKRAVGTYGYMPPEYAMDGHFSFKSDVYSFGVLLLELLSGKKNKGFFHPDHKLNLLGHAWKLWHENRVIELIDPLLEDQVTTLESILKCIQIGLLCVQQHPEERPTMSSVVLMLDGESVLVPKPRRPGLYSERCFLDTDSSSRGMLNSGSNDITVTTTLVEGR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00354 824 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Trre4g00354 824 Pfam Protein tyrosine and serine/threonine kinase 504 773 IPR001245 GO:0004672|GO:0006468
Trre4g00354 824 Pfam PAN-like domain 343 409 IPR003609 -
Trre4g00354 824 PIRSF SRK 1 824 IPR024171 GO:0004674
Trre4g00354 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 783 - -
Trre4g00354 824 SMART blect_4 35 156 IPR001480 -
Trre4g00354 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 187 IPR036426 -
Trre4g00354 824 CDD PAN_AP_plant 344 424 - -
Trre4g00354 824 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 766 - -
Trre4g00354 824 Gene3D Transferase(Phosphotransferase) domain 1 579 781 - -
Trre4g00354 824 SUPERFAMILY Protein kinase-like (PK-like) 486 775 IPR011009 -
Trre4g00354 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 578 - -
Trre4g00354 824 Gene3D - 24 153 IPR036426 -
Trre4g00354 824 SMART ntp_6 344 423 IPR003609 -
Trre4g00354 824 SMART serkin_6 503 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00354 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 153 - -
Trre4g00354 824 ProSiteProfiles Protein kinase domain profile. 503 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00354 824 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
Trre4g00354 824 Pfam D-mannose binding lectin 77 182 IPR001480 -
Trre4g00354 824 CDD B_lectin 36 156 IPR001480 -
Trre4g00354 824 Pfam S-locus glycoprotein domain 214 321 IPR000858 GO:0048544
Trre4g00354 824 CDD STKc_IRAK 509 777 - -
Trre4g00354 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Trre4g00354 824 Gene3D Phosphorylase Kinase; domain 1 478 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00354 Trre-Chr4 2421149 2424631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00354 423 811 Receptor kinase-like Gene Family AT4G05200 50.891 7.33e-126 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g00354 PK_Tyr_Ser-Thr 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00354 - - mtr:11421613 1530.77