Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00351 ATGGCAGAGGAGTTTCAAGCAGGAATTTGTGGTGAAACATGGTGGAATATTAATAATTCAACAAGAAGTGTATTTCCTCTTATGATGAATTCATCATCAACATGTTCTGTTGCAGCTAATGATGTAGGGAACTATAGTACTTGGCAAAATGAACTTTTGGGTTTGAAAGAAACAAGGATTTGTTCTGTTGATGAAACTAATAATAACTTTGATTTTTCTGATTGTGCTTTGAGTTTTCTTGATGCTCAAAAGCCACAACAGAGTGAATCATCAGCTAATATTGGAACTGGTAGCATGTTGATTGATTCCACTTTACAAATTATGGGTTTTGATCTCTCGTCTCCAACTTCATCCAATTGGAATCACTCCCTATTTAATTGTAATGGAAGGCAAGAGAGCAATTTTCACTCTATGATTCAAGAAGAAACATGTTTAGATTCATCTAATGATTCACAAATCCAAGTTTCAACAGTTGATGCTTTCATCAAACCAATGGATCAAGAATTTTCAATAGATCAGCAGAGTCTAATTTCTGTAACAAGCACTGGTTTATCAAATGGATGTCCAATTGGATCAGTTAATATTAATAATTCCTATGGTTACCCTTCAAATTTGATTCAAAGTTTATTTGATGATAATGATCCTCAACCTCAATCACTTTATACCAACCCTTCTATGTCCTATTCATCTTCCAATGAACTTTCCCTTATGAAACCTTCAATGCCAAAACAACAACAACAACTTAGTAGTGGATTGCAATTTTCCAATAATACCCCTTTTTGGAATGCTTCAGCTGAGGCCCTTAATGACATCAGAGCTGGAGTTTTGGCTTCATCACAACCACAATATCAATCTCCAAATTTTGATCAAGATAACAAATTCAATTCCTCTAATGCTCTATTAAACAAGCTAAAGAGAGAAAAATCTCCAGAAACGAAAAACTCATCTGATGCGGTAGCTAAGAGGCCAAGAATTGAGACTCCATCACCATTACCAACTTTTAAGGTTCGGAAAGAGAAGTTAGTGATAGAACATGACAGCACATGGGACCGTATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACAGCATCTGTTCTTCATGAAGCCATTGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGCACTCCATATATGAAAAATGGATCTCCCATTCAACACCAACAGGGTTGTGATAATGTGAAGGACTCACAAGAGAAAAAACAAGATTTAAGAAGTCAAGGGCTTTGTTTGGTGCCGATCTCAAGCACATTTCCAATGACTAATGAGACACCGGTTGATTTCTGGACGCCTACATTTGGAGGCCCACTCTTTGGCCGATAG 1365 0.3692 MAEEFQAGICGETWWNINNSTRSVFPLMMNSSSTCSVAANDVGNYSTWQNELLGLKETRICSVDETNNNFDFSDCALSFLDAQKPQQSESSANIGTGSMLIDSTLQIMGFDLSSPTSSNWNHSLFNCNGRQESNFHSMIQEETCLDSSNDSQIQVSTVDAFIKPMDQEFSIDQQSLISVTSTGLSNGCPIGSVNINNSYGYPSNLIQSLFDDNDPQPQSLYTNPSMSYSSSNELSLMKPSMPKQQQQLSSGLQFSNNTPFWNASAEALNDIRAGVLASSQPQYQSPNFDQDNKFNSSNALLNKLKREKSPETKNSSDAVAKRPRIETPSPLPTFKVRKEKLVIEHDSTWDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTPYMKNGSPIQHQQGCDNVKDSQEKKQDLRSQGLCLVPISSTFPMTNETPVDFWTPTFGGPLFGR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00351 454 Gene3D - 345 403 IPR036638 GO:0046983
Trre4g00351 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 399 IPR036638 GO:0046983
Trre4g00351 454 MobiDBLite consensus disorder prediction 212 253 - -
Trre4g00351 454 CDD bHLH_AtbHLH_like 331 389 IPR045239 -
Trre4g00351 454 FunFam Transcription factor bHLH123 family 335 404 - -
Trre4g00351 454 MobiDBLite consensus disorder prediction 303 331 - -
Trre4g00351 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 381 IPR011598 GO:0046983
Trre4g00351 454 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 156 433 - -
Trre4g00351 454 MobiDBLite consensus disorder prediction 304 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00351 Trre-Chr4 2399360 2406769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00351 1 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 39.957 9.71e-69 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00351 - - psat:127083163 511.916