Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00337 ATGGCACAAAAGAAACGCCTCCCTTCTCCTTCTCTTGAAGATGACCACACACCTTCAACCCAAAAACAGCCAGAAGACGAAGTAGCTGAAGAAGATTCATCTGATGAAGAAGATTCTTCATCCGAAGAAGAAGATTTTCAAATTCAACCCATTTCCAAAAACCCTCCACCTTCTACTCCGATCTCAAACCCTAAACCTGCTTCTGATTCTGAATCCGAATCTGGATCAGACTCCGGTTCTGATTCCGGATCTGGATCCGATTCTGAAACTGATTCCCAACCGGAACCAACTCCACCTCCTAAACCACTCGCTTCCAAGCCCATGAAGGCCCAACCAAAGCCCCAAATCCAGGCCCAATCAACTCCTGTACCAGCCAAATCTGGAACAAAACGTCCCGTCGAGAACGGAAATGACTCTAACCGTTCGAAGAAGAAAACAACCGCCGCTGCTTCTGACGACGAGAGTGAGACCGAAGAAGATGTGAAGTTGACTGGAGGAGAAGACTCAAAGAAGAGTACTCAGAGAATTTTCGGCGAAGAAGATGAGCTTACCATTCTCAAAAGTCTTGCTGATTTCATTTCAAAAACTGGAAAAGATCCGTTGAAGGATGGACCCGCATTTCATAGCTTTGTGAAGAAATCCCTCCGTGCTGAAGCTAACAGCGATCAGCTGAAGCGAAAGGTTCGTACTTTGAAGAAGAAGTTTGAAGCTAGTGACAGTTTCACTAAACCCCATGATAAGAAAGCTTTTGAGCTTTTCAAAAAGGTTTGGGGTAACAATGGTCCAAATGAAGCTGAAGAAAATGGAAAAGTTAACAAGGGTGTTAAGAAGGAAGCTACTGGTTCTGTTAAGAAGGAAACTGTAAAAGAGGAAAGTGAGGTTGATGTGAGTTTGTCTTGGAGTGAAATGTGTCGGTTTGCTGATTCTTTGGGTTTGTCTGCTTTTAATAGGGATGCTATGAAAGATGGATACGAATTGCTTGCGGAATCGAAGAAGGTTGAATTGGCGAAAAAGTGGAGGAAGGTACAAATTGCTGAATTGGAGTTGTTTATAGGACGTGCACAGCTGGTTATGGATCAGAGTAACTTGATATTGGAGGCAATCAATAAATCAAACTAG 1119 0.4334 MAQKKRLPSPSLEDDHTPSTQKQPEDEVAEEDSSDEEDSSSEEEDFQIQPISKNPPPSTPISNPKPASDSESESGSDSGSDSGSGSDSETDSQPEPTPPPKPLASKPMKAQPKPQIQAQSTPVPAKSGTKRPVENGNDSNRSKKKTTAAASDDESETEEDVKLTGGEDSKKSTQRIFGEEDELTILKSLADFISKTGKDPLKDGPAFHSFVKKSLRAEANSDQLKRKVRTLKKKFEASDSFTKPHDKKAFELFKKVWGNNGPNEAEENGKVNKGVKKEATGSVKKETVKEESEVDVSLSWSEMCRFADSLGLSAFNRDAMKDGYELLAESKKVELAKKWRKVQIAELELFIGRAQLVMDQSNLILEAINKSN 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00337 372 MobiDBLite consensus disorder prediction 1 175 - -
Trre4g00337 372 Pfam Protein of unknown function, DUF573 174 258 IPR007592 GO:0006355
Trre4g00337 372 PANTHER BNAANNG10740D PROTEIN-RELATED 26 367 IPR007592 GO:0006355
Trre4g00337 372 Coils Coil 214 234 - -
Trre4g00337 372 MobiDBLite consensus disorder prediction 136 152 - -
Trre4g00337 372 MobiDBLite consensus disorder prediction 93 107 - -
Trre4g00337 372 MobiDBLite consensus disorder prediction 64 92 - -
Trre4g00337 372 MobiDBLite consensus disorder prediction 8 27 - -
Trre4g00337 372 MobiDBLite consensus disorder prediction 28 44 - -
Trre4g00337 372 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00337 Trre-Chr4 2333999 2335117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00337 78 367 GeBP Transcription Factor Family AT1G61730 33.022 1.44e-34 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre4g00337 DUF573 7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00337 - - cam:101512869 310.842