Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00316 ATGTCCAGATCTTGTGATCACATCAAAGACCTCAATGACAAAAAAAAAGTCTGGAAACTTGCAGTCAGAATTGATGATATCTGGAGTAATACCAAATCCTCCAAAGAATATGCTGAAATGGTTATTAGAGACATGAAGGGTGATTCAATACATGTACTGTTTGGACCTGAAGAATACAAGAAAAGGAAAGATGAGTTTGCTGCTCTTATGAAACTTAAAACATGTTTAATGAGCAATTTTAGGCTTCAGCCCAATGATAATAAGTTTAAACTAACTCCTCATCCATTTAAGTTGCATATCATTTCTGGGACAACCATTAAGCCAAATGATATGCCAACAATGCCTGATTATTTCTTCAAGTTCATGAAATTTGATGATATCAAATCTATGACTTTTCGTGAAGATATCTTAGTTGATGTCATTGGTGCTGTTCATGAAATTGGGTCTGCCCAAACAACTGCATCTACTGGAAAACTTAACATATCTTTCCGAATCAAAGACTTGAGTGGAACTGTATTGGACTGTATACTTTGGGAGAGTGTTGCTTCCAATTTCATGGAATACTGCAAGAATCGAACCGAAGAGGGTCCTATGATCATGATCATTCGACGTGCTAGGCTTCAAAAACCCACAGTTCGTTATCCTTTGCAAATTTCCAATGCATGGAATGGAACTAAGCTGATCATTAATCAAGACATTCCTGATATCAGTGAGTTCAAAAAAAGCTTACCTGCGGACAACAGCTATGCTACGCAAAACAAAATGATGTCCTTTTCTTCCCAAAGGTTTGCAAGCAGTGCAGGTGGATCACAAATGACACCGGAGGATAACTTCATACAAAATTATCGCATTCTCAAACTTTCTGATATTATGAGACTTCCTAAGGATGAAATATGTGTGACTGTTGTCAAAACTACTTGCCTTAAACCTTCTGATCGTGGATGGTACATGCTTGGATGCAAAAGCTGCATTAGGGAAACTAAAGGGACTGAACCACCATATGAATGTGGTGAAGGTCACAAAACCGCTGATCCTATACTCAGGATTGATGTTCAGGTCTCCGATGGAGATGACAAAACTAAGTTTGTCTTCTGGGATAATAGTTGCATTGATTTATTAGGAGTTACTGCTTCTGAACTTCAAAAACAAATGCTTGAGGATGGGGTTACTGATCCTTTGGAATATCCTAAAAATTTTGATGAAATGATGGGAAGGACTTTTGCTTTCCGTGTCAAATGGCAAAAAGACTGGAAATCATGA 1260 0.377 MSRSCDHIKDLNDKKKVWKLAVRIDDIWSNTKSSKEYAEMVIRDMKGDSIHVLFGPEEYKKRKDEFAALMKLKTCLMSNFRLQPNDNKFKLTPHPFKLHIISGTTIKPNDMPTMPDYFFKFMKFDDIKSMTFREDILVDVIGAVHEIGSAQTTASTGKLNISFRIKDLSGTVLDCILWESVASNFMEYCKNRTEEGPMIMIIRRARLQKPTVRYPLQISNAWNGTKLIINQDIPDISEFKKSLPADNSYATQNKMMSFSSQRFASSAGGSQMTPEDNFIQNYRILKLSDIMRLPKDEICVTVVKTTCLKPSDRGWYMLGCKSCIRETKGTEPPYECGEGHKTADPILRIDVQVSDGDDKTKFVFWDNSCIDLLGVTASELQKQMLEDGVTDPLEYPKNFDEMMGRTFAFRVKWQKDWKS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00316 419 PANTHER OS03G0429900 PROTEIN 8 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre4g00316 419 Gene3D - 113 255 IPR012340 -
Trre4g00316 419 SUPERFAMILY Nucleic acid-binding proteins 119 249 IPR012340 -
Trre4g00316 419 SUPERFAMILY Nucleic acid-binding proteins 6 110 IPR012340 -
Trre4g00316 419 SUPERFAMILY Nucleic acid-binding proteins 294 416 IPR012340 -
Trre4g00316 419 Gene3D - 3 108 IPR012340 -
Trre4g00316 419 Gene3D - 262 418 IPR012340 -
Trre4g00316 419 CDD RPA1_DBD_B_like 139 244 - -
Trre4g00316 419 Pfam Domain of unknown function DUF223 39 137 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00316 Trre-Chr4 2173440 2175439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00316 8 241 Core DNA Replication Machinery Family AT5G45400 22.581 2.45e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00316 - - tpra:123884216 345.895