Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00308 ATGTTCACCGGAGTATTTTTCCGTCACGGCTCACCACCGTCCATTTTCCTCACTACTCTGTTTTTCCTCTGTTTCATTACTCATTCACACTCAACCGAGCTTCAATATCTTATGAACTTCAAATCCTCAATCCAAACTTCTGATCCAAACATTTTCACTTCATGGCACCTATCAAATTCACCCTGCAACTTCACCGGAATTCTCTGCAATTCCGAAGGTTCAGTTACACAAATCAACCTTGCACAGAAAAATCTTGTGGGCACACTTCCTTTTGATTCAATATGCAACCTTCAATCACTTGAGAAAATCTCTTTGGAATCAAATTCTTTGCATGGAAGCATCACTGATGATTTGAAGAATTGCACAAACTTGAAGTACTTGGATTTAGGTGGAAATTTATTCAATGGAACATTTCCTGAATTTTCATCTTTGAATAAGTTAGAGTACTTGAATCTAAATAATAGTGGGATTTCAGGTAAATTTCCATGGAAATCATTGGAAAATCTAACAACTCTCACTTTCTTAAGCCTTGGTGATAATCTTTTTGAAGAAAGTTCTTTCCCTTTAGAGATTCTAAAGCTTGAAAAATTGTATTGGCTTTACCTAACCAATATCAGCATCTATGGAAAAATTCCATTTGGTATTGGAAATCTCATTCAGCTTCAACATCTTGAGATTTCTCATAACAATTTATCTGGTGAAATTCCACATGATATTGTAAAGCTTAAGAATCTAAGAGAGCTTGAGATATATGAGAACAATTTGAGTGGAAAAATTCCATTTGGATTTCGAAACCTTACGAATCTTGTTCTATTTGATGCTTCGATTAATCACCTTGAAGGTGATTTTTCTGAGCTTAAGTCATTGAAAAATCTTCAATCTCTTCAGCTTTTTGAAAACAAGTTCTCAGGAGAGATTCCACAAGAGTTTGGAGATTTTAAGAATCTCACAGAACTTTCTCTTTATGATAACAAGCTCACTGGTTTTCTTCCACAAAAACTTGGTTCTTGGGTTGGAATGGCTTACATAGATGTTTCAGATAATTCACTTTCTGGTCCTATACCACCTGATATGTGCAAGAACAACCTAATTGATGATATAGCTTTGTTGAATAACAGTTTCACAGGAAGTATACCAGAAAACTATGCAAATTGCACTTCTTTGGTTCGGTTTCGAGTAAACAAGAATTCACTTTCTGGTGTTGTTCCTAAAGGTATATGGGGCTTACCAAAGTTGGAAATTTTTGATACTGCAAGGAACAAATTTGAAGGTTCTATTTCATCTGATATTGGAAAAGCTAAATCTCTAGCTCAACTTTTTTTATCTGATAATCAGTTCTCAGGTGAGTTACCATTGGAAATTTCAGAAGCTTCTTCTTTGGTTTCGATTCAGTTAAGTTCGAATCGTATTTCTGGTAACATACCGGAAAGTATAGGCAAATTGAAGAAACTAACTAGTCTTAGTTTGAATAAGAACAATCTTTCTGGTGTTATACCAGATTCTATTGGTTCTTGTGTTTCTCTTACTGATGTAAACCTTGCTGAAAATTCCATTTCTGGTGTAATTCCAACTAGTTTCGGTTCTTTGCGTGCGCTTAATTCATTGAACTTGTCTTCGAATATCCTTTCTGGTGAGATTCCATCAAGTTTATCGTCTCGAACATTTAGCCTTCTTGATTTATCAAACAATAAGTTGTTTGGTTCCATACCAGATTCACTTGCTATTTCAGCTTTCAAAGATGGTTTCATGGGAAATCCTAGACTATGCAGCCAAATTTTGAAGGATTTTCAACCATGTTCATTGCAATCTAGCAGCTCGAAGCGACTCCGAAACCTCGTGTTCTATTTCATTGCTGGTTTAATGGTTCTGGTTGTTTCATCAGCATTTTTCCTCTTCATGAGACTTAAACAGAAGAGCAAGTTCGAGAAGCAAGTACTGAAGACTAATTCATGGAATTTCAAGAAATATCATGTGCTAAACATCAATGAGAATGAAATTATTGATGGAATCAAAGCCGAAAATGTGATTGGAAAAGGAGGGTCAGGGAATGTTTACAAAGTTGAGCTCAAAAGTGGTGAAGTTTTTGCTGTCAAACACATTTGGACTTCAAATTCAAGAAGTGATTATAGAAGCAGTTCAGCAATGTTAAAAAGGAGTTCAAATTCATCTGAGTATGATGCCGAGGTAGCAACTTTGAGTTCTATAAGACATGTGAATGTGGTGAAACTCTATTGTAGTATCACAAGTGAAGATAGTAGTTTGCTTGTTTATGAGTTTTTACCAAATGGAAGTTTGTGGGAAAGGTTGCATAATTGTAAGAAGACTCAGATGGGTTGGGATGTTAGGTATGACATTGCATTGGGTGCTGCTAGAGGATTGGAGTATTTACATCATTGTTGTGATAGACCTGTTATGCATAGGGATGTTAAATCAAGTAACATATTGCTTGATGAGGAATGGAAGCCAAGGATTGCTGATTTTGGACTTGCTAAGATTGTGCAAGGTGGAGCTGGTAATTTGACTCATGTCATTGCTGGAACGCTCGGCTACATGGCTCCTGAATATGCCTACACTAGTAACGTGACAGAGAAGAGTGACGTATACAGTTTTGGCGTAGTACTGATGGAGTTGGTAACCGGGAAGAAGCCTGTGGAGCCAGAGTTTGGAGAGAATAAGGATATTGTCAGTTGGGTATGCAGCAACTTTAGGAGCAAAGAAAGTGTACTTGAATTGGTGGATTCTACCATTGCAAAACATTTCAAAGAAGATGCCATTAAGGTGTTGAGAATCGCGATATTGTGCACCGCGAAAGTTCCATATTCAAGACCATCAATGAGAAAGTTGGTCCAAATGTTGGAAGAGGCAGAGCCATCAGCCATGTTCTCCAACAAAGTGATTGTCACCATAGATGGTTAA 2916 0.3687 MFTGVFFRHGSPPSIFLTTLFFLCFITHSHSTELQYLMNFKSSIQTSDPNIFTSWHLSNSPCNFTGILCNSEGSVTQINLAQKNLVGTLPFDSICNLQSLEKISLESNSLHGSITDDLKNCTNLKYLDLGGNLFNGTFPEFSSLNKLEYLNLNNSGISGKFPWKSLENLTTLTFLSLGDNLFEESSFPLEILKLEKLYWLYLTNISIYGKIPFGIGNLIQLQHLEISHNNLSGEIPHDIVKLKNLRELEIYENNLSGKIPFGFRNLTNLVLFDASINHLEGDFSELKSLKNLQSLQLFENKFSGEIPQEFGDFKNLTELSLYDNKLTGFLPQKLGSWVGMAYIDVSDNSLSGPIPPDMCKNNLIDDIALLNNSFTGSIPENYANCTSLVRFRVNKNSLSGVVPKGIWGLPKLEIFDTARNKFEGSISSDIGKAKSLAQLFLSDNQFSGELPLEISEASSLVSIQLSSNRISGNIPESIGKLKKLTSLSLNKNNLSGVIPDSIGSCVSLTDVNLAENSISGVIPTSFGSLRALNSLNLSSNILSGEIPSSLSSRTFSLLDLSNNKLFGSIPDSLAISAFKDGFMGNPRLCSQILKDFQPCSLQSSSSKRLRNLVFYFIAGLMVLVVSSAFFLFMRLKQKSKFEKQVLKTNSWNFKKYHVLNINENEIIDGIKAENVIGKGGSGNVYKVELKSGEVFAVKHIWTSNSRSDYRSSSAMLKRSSNSSEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWERLHNCKKTQMGWDVRYDIALGAARGLEYLHHCCDRPVMHRDVKSSNILLDEEWKPRIADFGLAKIVQGGAGNLTHVIAGTLGYMAPEYAYTSNVTEKSDVYSFGVVLMELVTGKKPVEPEFGENKDIVSWVCSNFRSKESVLELVDSTIAKHFKEDAIKVLRIAILCTAKVPYSRPSMRKLVQMLEEAEPSAMFSNKVIVTIDG 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00308 971 Gene3D Ribonuclease Inhibitor 339 600 IPR032675 -
Trre4g00308 971 Gene3D Ribonuclease Inhibitor 187 338 IPR032675 -
Trre4g00308 971 FunFam Probable inactive receptor kinase RLK902 30 188 - -
Trre4g00308 971 SMART serkin_6 670 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00308 971 SUPERFAMILY Protein kinase-like (PK-like) 661 953 IPR011009 -
Trre4g00308 971 SUPERFAMILY L domain-like 306 613 - -
Trre4g00308 971 Gene3D Phosphorylase Kinase; domain 1 651 759 - -
Trre4g00308 971 Pfam Protein kinase domain 673 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00308 971 SUPERFAMILY L domain-like 51 358 - -
Trre4g00308 971 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515
Trre4g00308 971 ProSiteProfiles Protein kinase domain profile. 670 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00308 971 FunFam Leucine-rich repeat receptor-like protein kinase TDR 286 601 - -
Trre4g00308 971 CDD STKc_IRAK 676 954 - -
Trre4g00308 971 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Trre4g00308 971 FunFam Receptor-like protein kinase HAIKU2 653 759 - -
Trre4g00308 971 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 243 953 - -
Trre4g00308 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Trre4g00308 971 FunFam Leucine-rich receptor-like protein kinase family protein 189 285 - -
Trre4g00308 971 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 760 968 - -
Trre4g00308 971 Pfam Leucine rich repeat 483 540 IPR001611 GO:0005515
Trre4g00308 971 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Trre4g00308 971 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Trre4g00308 971 Gene3D Transferase(Phosphotransferase) domain 1 760 966 - -
Trre4g00308 971 SMART LRR_typ_2 313 337 IPR003591 -
Trre4g00308 971 SMART LRR_typ_2 481 505 IPR003591 -
Trre4g00308 971 SMART LRR_typ_2 289 312 IPR003591 -
Trre4g00308 971 SMART LRR_typ_2 529 557 IPR003591 -
Trre4g00308 971 SMART LRR_typ_2 218 242 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00308 Trre-Chr4 2135528 2139005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00308 16 961 Receptor kinase-like Gene Family AT1G09970 58.867 0.0 1079
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre4g00308 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00308 - - gmx:100811489 1365.9