Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00305 ATGAGTTCTCACATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGGACTAATAGAGGATCCTAACTTTCTCCATCACTGGAATAATCACCTAAATTCAATTGATACCAATAACTTAACTGCTTCTGCTTTTGGAGATGCTTTACAAAAACATTTTTTGTCAAGTAATCCAAATTTCATCAACAAAACATGCATGGAAAATTCACCTACCGGAAGTGAAAGACCAATGAAACAGCTTAAAAATAACAGCTGGAATTACAACAATAGTCCTCAAACATCAGAAACACAATATGCTAATTCTTGCTCCAACAATCTTCTTTCATTTGCTGATTCGAATTACGAAAATCAATTGGGACTATTGAAGCCTAAGTCCGAAATGGTTTGTCCTAAAATCGATAACAATAGTACTCTTGCAAACATGTTTGGGAATCAAAACCATGTCTTCAAAGCTTTTCAAGAGGCGAAAGATATTGAGACGACTCGTCCTAATAAACTTTCTCAAGCTCATGATCACATAGTAGCTGAAAGGAAGCGCCGCGAGAAGCTTAGCCAGCGATTCATTGCTCTATCTGCTCTTGTTCCAAACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTGAAGCAAATGGAAGAGAAAGTGAATGGTCTTGAGGAGGAAAAGAAAAGGAAGAAAAGTGTGGAATCTGTTGTAATAGTAAAGAAATCTCAACTTTCTTATAATGATGCTGAAGACTCTTCTTCTGATAATACTACATTTGATGAGACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTCCTCATAAGACTACACTGTCTTAAGAGTCAAGGAGTTATTGAGAAAACAATAAGTGAAATTGAGAAACTTCATCTAAAAGTTATCAATAGTAGTGCCTTAACATTTGGGAATTTCACCCTTGATATAACCATTATTGCACAGATGGATGTGGGATTTTGTATGACACTGAAGGATCTTGTGAGAAAGCTACGGTCAGCATATTCATCTTTCATGTGA 1041 0.3622 MSSHMEISSIRGLPELGLIEDPNFLHHWNNHLNSIDTNNLTASAFGDALQKHFLSSNPNFINKTCMENSPTGSERPMKQLKNNSWNYNNSPQTSETQYANSCSNNLLSFADSNYENQLGLLKPKSEMVCPKIDNNSTLANMFGNQNHVFKAFQEAKDIETTRPNKLSQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVNGLEEEKKRKKSVESVVIVKKSQLSYNDAEDSSSDNTTFDETLPEIEARFCERSVLIRLHCLKSQGVIEKTISEIEKLHLKVINSSALTFGNFTLDITIIAQMDVGFCMTLKDLVRKLRSAYSSFM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00305 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Trre4g00305 346 PANTHER BHLH TRANSCRIPTION FACTOR 43 343 - -
Trre4g00305 346 Pfam Helix-loop-helix DNA-binding domain 172 217 IPR011598 GO:0046983
Trre4g00305 346 SMART finulus 173 222 IPR011598 GO:0046983
Trre4g00305 346 CDD bHLH_AtNAI1_like 167 242 - -
Trre4g00305 346 Coils Coil 206 233 - -
Trre4g00305 346 Gene3D - 157 232 IPR036638 GO:0046983
Trre4g00305 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00305 Trre-Chr4 2105095 2107261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00305 167 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.738 1.58e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre4g00305 HLH 8.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00305 - - gmx:100798018 464.151