Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00281 ATGGGAAGAGGAAAGATTGCAATTAGAAGGATCGACAATTCAACAAGCAGGCAAGTGACTTTCTCAAAAAGAAGAAATGGATTGTTGAAGAAAGCAAAAGAGTTATCAATTCTTTGTGATGCTGAAGTTGGATTGATTGTCTTTTCAAGCACCGGAAAGCTTTATGATTATTCAAGCACTAGCATGAAATCTGTTATTGATCGCTATAACAAACAAAAAGAGGAACAACATCAGCTAATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGACAGAAGCAGCAAGCCTGAGACAACAACTGCAGTACTTGCAAGAAAGCCATAGGCAATTGATGGGAGAAGGACTTGCTGGTTTGGGTATTAAAGAACTACAAAATCTGGAAAACCAGCTGGAGATTAGTCTAAAGGGTGTTCGAATGAAAAAGGATCATATTTTGACTAATGAGATTAAAGAGCTACACCAAAAGGGAAATCTTGTTCATCAAGAAAATGTAGAACTCCATAAGAAGATGGACCTTGTCCAAAAAGAAAATGCAGAGCTACTGAAGAAGGTTTATGAAGCAAGGAGTACAAATGAAGAAAATGCAACAACCAATCTTTCATGCACTATCAGAAACGGATTTGATTTACATGCACCTATCAGTCTCCAGCTAAGCCAGCCACAGCCTCAATACAGTGAACCAGCAGCCAAAGCCATGAAATTAGGATTACAGCTGCATTAG 720 0.3861 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYDYSSTSMKSVIDRYNKQKEEQHQLMNPASEVKFWQTEAASLRQQLQYLQESHRQLMGEGLAGLGIKELQNLENQLEISLKGVRMKKDHILTNEIKELHQKGNLVHQENVELHKKMDLVQKENAELLKKVYEARSTNEENATTNLSCTIRNGFDLHAPISLQLSQPQPQYSEPAAKAMKLGLQLH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00281 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre4g00281 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre4g00281 239 Coils Coil 120 140 - -
Trre4g00281 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Trre4g00281 239 FunFam AGAMOUS-like 21 13 87 - -
Trre4g00281 239 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Trre4g00281 239 Coils Coil 163 183 - -
Trre4g00281 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre4g00281 239 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre4g00281 239 Coils Coil 86 113 - -
Trre4g00281 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre4g00281 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre4g00281 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre4g00281 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre4g00281 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trre4g00281 239 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Trre4g00281 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00281 Trre-Chr4 1918578 1936487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00281 1 239 MADS-box Gene Family AT2G14210 62.083 1.19e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre4g00281 K-box 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00281 K09264 - gmx:100808145 389.423