Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00280 ATGAGTTCCGCAGGTGTCGGTGAAGATTGCCTTGGATGGGCAGCAAGAGATGCGTCTGGAGTTCTGTCGCCTTACAAATTCAATCGCAGGGCACTTGGGAGTGAAGATGTTTATGTTAAAATTACACACTGTGGCGTTTGTTATGCTGATGTAATTTGGGCAAGGAATAAACATGGGGATTCAAAGTATCCTGTTGTACCGGGGCATGAGATTGCTGGGGTTGTGGTAAAGGTTGGTCCTAATGTCCAGCGTTTCAAGGTTGGCGACCATGTTGGAGTGGGGACTTACGTCAACTCATGCAGGGAATGCGAGTATTGTAACGATAGATTAGAAAATCATTGTGTCAAGGGATCAGTTTACACCTTTAATGGTGTTGATTTTGATGGTACAGTTACAAAAGGAGGATACTCCACTTCTATTGTAGTACATGAAAGGTATTGCGTCATGATACCTAAAAGCTATCCTTTAGCTTCGGCAGGTCCTTTGCTTTGTGCTGGAATCACAGTTTATTCTCCCATGATACGCCATAAGATGAATCAACCTGGTAAGTCTCTAGGAGTGGTTGGTCTTGGTGGCCTCGGTCATATGGCAGTAAAATTTGGGAAGGCATTTGGTTTGCGTGTAACGGTTTTCAGCACTAGTAGTTCCAAGAAAGAGGAGGCGCTGAGCCTGCTTGGTGCAGACAACTTTGTTGTTTCATCTAATCAAGAAGAGATGAGGGCGTTGGCTAAATCATTGGATTTTATAGTTGACACAGCATCGGGTGATCACCCATTTGATCCTTACATGTCACTGTTGAAGATATCTGGTGTTCTAGTCTTAGTTGGGTTCCCAAGTGAAGTCAAATTCAGCCCTGCAAGCCTTAATTTAGGATCAAGAACTATTTCCGGAAGTCTTTCAGGTGGTACAAAAGAAATACAGGAGATGGTTGACTTCTGTGCTGCAAACAAGATTTACCCAGATATAGAACTGATTCCAATTGGATACTCGAATGAAGCTCTTGACAGGGTCGTAAATAAGGACGTGAAATATCGGTTTGTAATAGACATTGAAAACTCCCTTAAGTAG 1068 0.4298 MSSAGVGEDCLGWAARDASGVLSPYKFNRRALGSEDVYVKITHCGVCYADVIWARNKHGDSKYPVVPGHEIAGVVVKVGPNVQRFKVGDHVGVGTYVNSCRECEYCNDRLENHCVKGSVYTFNGVDFDGTVTKGGYSTSIVVHERYCVMIPKSYPLASAGPLLCAGITVYSPMIRHKMNQPGKSLGVVGLGGLGHMAVKFGKAFGLRVTVFSTSSSKKEEALSLLGADNFVVSSNQEEMRALAKSLDFIVDTASGDHPFDPYMSLLKISGVLVLVGFPSEVKFSPASLNLGSRTISGSLSGGTKEIQEMVDFCAANKIYPDIELIPIGYSNEALDRVVNKDVKYRFVIDIENSLK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00280 355 FunFam Cinnamyl alcohol dehydrogenase 165 320 - -
Trre4g00280 355 SUPERFAMILY GroES-like 16 183 IPR011032 -
Trre4g00280 355 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 185 212 IPR029752 -
Trre4g00280 355 Pfam Alcohol dehydrogenase GroES-like domain 35 149 IPR013154 -
Trre4g00280 355 PANTHER ALDEHYDE REDUCTASE 9 353 IPR047109 GO:0016616
Trre4g00280 355 CDD CAD1 12 349 IPR047109 GO:0016616
Trre4g00280 355 Gene3D - 13 350 - -
Trre4g00280 355 Gene3D - 165 320 - -
Trre4g00280 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Trre4g00280 355 Pfam Zinc-binding dehydrogenase 192 314 IPR013149 -
Trre4g00280 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 318 IPR036291 -
Trre4g00280 355 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00280 Trre-Chr4 1900486 1902285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00280 2 355 Monolignol Biosynthesis Gene Families AT1G72680 75.141 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00280 K00083 - gmx:100807617 615.535