LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g00231	ATGGCAACCGCCGATGATCCAGAATACTGGACGAAACTGATGGCCACTTACCTCCTCCGCCCCGAATCCGACCATTCCGATCAGCTCCGCTGCATTGTTTCTTCACCCGATTTCAATCTTCATTTTCCTCTCTACGTCGACTTCGCAGAATTGTTGGATTATGATCCTCGCATTGCTCATCTCATCTTTTCCCAATCTAATACATATCTTCAACTATTCGATGAAGCTGCTCTTAGGGTTCATAGAATTGTGTTAAGAGAAATGGCTGGTGATGACAAGAATAATGTGGTTGAGAAAAAGTACATTCATGTTCGGATTAACATAAGTGGTTCTCCCCTTGAATGCCCTGAGACTTTTCCGAGCATAGGACGTGTACGGGTGCAACATCGAGGGATTCTTCTCACTCTCAAAGGGATAGTAATCAGGTCCGGAGCTATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCACAAATGCAAAAACAGCTTCACAGTTCATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGTCCAATTCAGAAGCCAAAGCCCTGTGGGGGTACAAAATTCCAGTATGTAGAAAATACTATAGTGTGCCATGATTATCAGGAGATAAAAGTCCAAGAGAGCACACAGGTGCTTGGTGTTGGTGCAATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTCGTTAAAGCTGGAGATGATGTGATTGTTACTGGTCTCTTAACAGCAAGATGGTCTCCAGAGTTGAAGGATGTGCGCTGTGACCTTGATCCGGTATTAATAGCCAACAATGTAAGGAGAATCAATGAATTGAAGTCAGAAATTGATATTTCTGATGCCATCGTTATGAAATTCAAGCAGTTTTGGGATCACTTCAAAGAAACACCTTTAAAAGGAAGGAATGCTATTCTACGAGGAATCTGCCCACAAATATTTGGTCTTTTCACGGTCAAGCTGGCAGTTGCATTAACACTAATCGGAGGTGTACAACATGTCGATGCTTCTGGAACAAGGGTAAGGGGGGAGTCCCACTTACTCTTGGTCGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAATCGGTCTGTTATTACAACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCCGTGAAGGATGGGGGTGAGTGGATGTTGGAAGCTGGCGCCCTTGTCTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTCGCCAAGGCTGGTCTTGTAACAACCCTCAGTACCAAAACAACAGTATTTGGTGCCACAAATCCTAAGGGACATTATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTGTTAAGCAGATTTGATATAGTCCTGGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCAACTCATATTCTTTCTGAGGCAGAACCGGATAGAACATCCAATGATGATCTAGCAAATATCTGGCCTCTTTCTACACTCAAGAGATATATACACTATTTGAAAGAAAAATTCAGACCAGTCCTTACGAGAGAGGCCGAAACAGTTATATCAAGCTATTATCAACTTCAAAGGAAATCGGCAACTGATAATGCAGCTAGGACAACTGTCCGAATGCTTGAAAGTTTGATTCGCCTAGCTCAAGCTCATGCAAGACTGATGTTCAGAAATGAGGTGACTCGGCTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTCACTGACAACCCTGATCAGGAATATGCAAAGCAAGAAAGGTTGATCCTAGAAAAATTGGGATGCAATGACAAGTTTTCTGATATGAATAGGATGGAAGACTGA	2004	0.4291	MATADDPEYWTKLMATYLLRPESDHSDQLRCIVSSPDFNLHFPLYVDFAELLDYDPRIAHLIFSQSNTYLQLFDEAALRVHRIVLREMAGDDKNNVVEKKYIHVRINISGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCHKCKNSFTVHPEVEARNSISLPSICPIQKPKPCGGTKFQYVENTIVCHDYQEIKVQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTARWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDAIVMKFKQFWDHFKETPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSTHILSEAEPDRTSNDDLANIWPLSTLKRYIHYLKEKFRPVLTREAETVISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGCNDKFSDMNRMED	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g00231	667	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	320	626	IPR027417	-
	Trre4g00231	667	Gene3D	-	125	253	IPR012340	-
	Trre4g00231	667	Pfam	MCM OB domain	125	253	IPR033762	-
	Trre4g00231	667	Gene3D	-	285	622	IPR027417	-
	Trre4g00231	667	ProSiteProfiles	MCM family domain profile.	310	513	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre4g00231	667	Pfam	MCM P-loop domain	312	515	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre4g00231	667	FunFam	Probable DNA helicase MCM9	288	621	-	-
	Trre4g00231	667	SMART	mcm	118	618	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Trre4g00231	667	CDD	MCM9	313	616	-	-
	Trre4g00231	667	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	43	641	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Trre4g00231	667	SMART	AAA_5	352	501	IPR003593	GO:0016887
	Trre4g00231	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	409	423	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre4g00231	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	351	366	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre4g00231	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	487	495	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre4g00231	667	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	437	450	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Trre4g00231	667	SUPERFAMILY	Nucleic acid-binding proteins	41	261	IPR012340	-
	Trre4g00231	667	Pfam	MCM AAA-lid domain	535	616	IPR041562	-
	Trre4g00231	667	Gene3D	-	149	205	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g00231	Trre-Chr4	1549189	1561777	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g00231	14	641	Core DNA Replication Machinery Family	AT2G14050	74.643	0.0	971

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g00231	K10738		-	gmx:100776255	1110.13