Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00230 ATGATGGCAACCGCCGATGATCCAGAATACTGGACGAAACTGATGGCCACTTACCTCCTCCGCCCCGAATCCGACCATTCCGATCAGCTCCGCTGCATTGTTTCTTCACCCGATTTCAATCTTCATTTTCCTCTCTACGTCGACTTCGCAGAATTGTTGGATTATGATCCTCGCATTGCTCATCTCATCTTTTCCCAATCTAATACATATCTTCAACTATTCGATGAAGCTGCTCTTAGGGTTCATAGAATTGTGTTAAGAGAAATGGCTGGTGATGACAAGAATAATGTGGTTGAGAAAAAGTACATTCATGTTCGGATTAACATAAGTGGTTCTCCCCTTGAATGCCCTGAGACTTTTCCGAGCATAGGACGTGTACGGGTGCAACATCGAGGGATTCTTCTCACTCTCAAAGGGATAGTAATCAGGTCCGGAGCTATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCACAAATGCAAAAACAGCTTCACAGTTCATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGTCCAATTCAGAAGCCAAAGCCCTGTGGGGGTACAAAATTCCAGTATGTAGAAAATACTATAGTGTGCCATGATTATCAGGAGATAAAAGTCCAAGAGAGCACACAGGTGCTTGGTGTTGGTGCAATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTCGTTAAAGCTGGAGATGATGTGATTGTTACTGGTCTCTTAACAGCAAGATGGTCTCCAGAGTTGAAGGATGTGCGCTGTGACCTTGATCCGGTATTAATAGCCAACAATGTAAGGAGAATCAATGAATTGAAGTCAGAAATTGATATTTCTGATGCCATCGTTATGAAATTCAAGCAGTTTTGGGATCACTTCAAAGAAACACCTTTAAAAGGAAGGAATGCTATTCTACGAGGAATCTGCCCACAAATATTTGGTCTTTTCACGGTCAAGCTGGCAGTTGCATTAACACTAATCGGAGGTGTACAACATGTCGATGCTTCTGGAACAAGGGTAAGGGGGGAGTCCCACTTACTCTTGGTCGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAATCGGTCTGTTATTACAACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCCGTGAAGGATGGGGGTGAGTGGATGTTGGAAGCTGGCGCCCTTGTCTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTCGCCAAGGCTGGTCTTGTAACAACCCTCAGTACCAAAACAACAGTATTTGGTGCCACAAATCCTAAGGGACATTATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTGTTAAGCAGATTTGATATAGTCCTGGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCAACTCATATTCTTTCTGAGGCAGAACCGGATAGAACATCCAATGATGATCTAGCAAATATCTGGCCTCTTTCTACACTCAAGAGATATATACACTATTTGAAAGAAAAATTCAGACCAGTCCTTACGAGAGAGGCCGAAACAGTTATATCAAGCTATTATCAACTTCAAAGGAAATCGGCAACTGATAATGCAGCTAGGACAACTGTCCGAATGCTTGAAAGTTTGATTCGCCTAGCTCAAGCTCATGCAAGACTGATGTTCAGAAATGAGGTGACTCGGCTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTCACTGACAACCCTGATCAGGAATATGCAAAGCAAGAAAGGTTGATCCTAGAAAAATTGGGATGCAATGACAAGTTTTCTGATATGAATAGGATGGAAGACTGA 2007 0.429 MMATADDPEYWTKLMATYLLRPESDHSDQLRCIVSSPDFNLHFPLYVDFAELLDYDPRIAHLIFSQSNTYLQLFDEAALRVHRIVLREMAGDDKNNVVEKKYIHVRINISGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCHKCKNSFTVHPEVEARNSISLPSICPIQKPKPCGGTKFQYVENTIVCHDYQEIKVQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTARWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDAIVMKFKQFWDHFKETPLKGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSTHILSEAEPDRTSNDDLANIWPLSTLKRYIHYLKEKFRPVLTREAETVISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGCNDKFSDMNRMED 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00230 668 FunFam Probable DNA helicase MCM9 289 622 - -
Trre4g00230 668 Pfam MCM AAA-lid domain 536 617 IPR041562 -
Trre4g00230 668 SUPERFAMILY Nucleic acid-binding proteins 42 262 IPR012340 -
Trre4g00230 668 ProSiteProfiles MCM family domain profile. 311 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g00230 668 CDD MCM9 314 617 - -
Trre4g00230 668 Gene3D - 286 623 IPR027417 -
Trre4g00230 668 Pfam MCM OB domain 126 254 IPR033762 -
Trre4g00230 668 Pfam MCM P-loop domain 313 516 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g00230 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 627 IPR027417 -
Trre4g00230 668 SMART mcm 119 619 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre4g00230 668 SMART AAA_5 353 502 IPR003593 GO:0016887
Trre4g00230 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 410 424 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g00230 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 352 367 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g00230 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 438 451 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g00230 668 PRINTS Mini-chromosome maintenance (MCM) protein family signature 488 496 IPR001208 GO:0003677|GO:0005524|GO:0032508
Trre4g00230 668 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 44 642 IPR031327 GO:0003677|GO:0005524|GO:0032508
Trre4g00230 668 Gene3D - 126 254 IPR012340 -
Trre4g00230 668 Gene3D - 150 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00230 Trre-Chr4 1549186 1561777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00230 15 642 Core DNA Replication Machinery Family AT2G14050 74.643 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00230 K10738 - gmx:100776255 1110.13