Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00226 ATGGCACTCAATCATCATTCAAATAAGGATTTAAAAGTGACAGATGATGAACTTCTTCAATCATTCCTCTACAACAAAATTCACAATAAACCCTTGCCCAATTATATGACCATTCTCGAATACGATTTGTTTGGTACCACAAAGAATCCTTGTGACATTTGGAAAGAGTTTGCAGCTTCCCACTCATATAGTGGAAAAGACCTATATTTTTTCACTACCTTAAAGAAGAAATCAGCCAATAGCACGCGCATGGATCGTACTATTGGAACTGGTTCATGGGAAAGTGAAGATAGCGGAACAAGTATATTCGATAAAAATACAAACCAACTCCTTGGTATAAAAAAACGATATCGCTTTGAAACGAGTAAGGTTGATCCAGAATATGGTAGATGGATCTTGCACCAATATAGCCTTGATCAATCTTTGATAAGCAATCCTTCGGACAATAATTACGTTCTATGTAGATTTAGAAAGAATTTAAAACTGAATCAACAAAATACAGGAACAAGAATAAATCAGCAATCCAATTCACACAAAAATTCAAGAGCCAAGAAAGTTGGACAAAATAAACAAAGAAAAACCGTTGTTCCTCCATGTGCGGCGACAACCGCCATATCAGTAAGTAACTATATTTAA 636 0.3522 MALNHHSNKDLKVTDDELLQSFLYNKIHNKPLPNYMTILEYDLFGTTKNPCDIWKEFAASHSYSGKDLYFFTTLKKKSANSTRMDRTIGTGSWESEDSGTSIFDKNTNQLLGIKKRYRFETSKVDPEYGRWILHQYSLDQSLISNPSDNNYVLCRFRKNLKLNQQNTGTRINQQSNSHKNSRAKKVGQNKQRKTVVPPCAATTAISVSNYI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00226 211 PANTHER NAC TRANSCRIPTION FACTOR 56 14 175 - -
Trre4g00226 211 SUPERFAMILY NAC domain 14 157 IPR036093 GO:0003677|GO:0006355
Trre4g00226 211 MobiDBLite consensus disorder prediction 168 182 - -
Trre4g00226 211 ProSiteProfiles NAC domain profile. 5 159 IPR003441 GO:0003677|GO:0006355
Trre4g00226 211 MobiDBLite consensus disorder prediction 168 195 - -
Trre4g00226 211 Gene3D NAC domain 14 164 IPR036093 GO:0003677|GO:0006355
Trre4g00226 211 Pfam No apical meristem (NAM) protein 14 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00226 Trre-Chr4 1534396 1535229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00226 14 208 NAC Transcription Factor Family AT3G15510 28.019 2.04e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre4g00226 NAM 6.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00226 - - tpra:123896066 263.848