Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00222 ATGAAGGAAGAAGAAGAATCAACGGTCAAGATGGAGTGGTTAACTTCCATTGATTCAACAACTCTCTCTCACTCTGAACTTCAAGCACTTTCTCTCTCTTCTCTTTCTTCCTTCGACCTAAAATCTACGCGCCAAATCGTCACTCCCAAAATCGATCCTTCAACTTTCAACCACAGCGCCGGTTCTCACCGTCAAACCTACTCCCGATCTCACCGTCGTTGTCGTGCACCGCCACTTCTTCCAACTCCTGTTCTTCCCTCCGACCACCGTATCATCGTTGATTACCTCAAACAGTTTATTAAAGAAGATCCGAAGTTCGATCAGGTTGAGCTTCTTCAGCCTGTAGTTCCTTCAATTTCACCGCCGGTGATACTTTCCGGTGAAGTGAGGAAGAGGAAGAGAGGGAGGAAACCTAAAATGAAGGTGCATTTGGATGACTGTTATAGAGGGATGGAGATTGTGAACAAGAATGGTGTTGCTGTTGATTTGAATGTGTTGTCGATGGTGGAGCATCCATTTGCAGCGGAGATTGCGAGAAGGACGGAAGGGTTGAGTAAGGAAGAGGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGTCAATGGGGTAGTAGGAGGAGGAAGAGGAGGATTGTTGATGCTGCTGATTTTGGAGATGTGTTGCCTCTTGGATGGAAGCTTCTTCTTAGTTTGAAGAGGAAAGATGGTCGTGCTTGGATCTATTGCCGTAGATATATAAGCCCTAGTGGACAGCCGTTTGTGTCTTGCAGAGAAGTTTCTTCCTATTTGCAGTCTCGTTTTGGTCACTCTGATTTACAGTTACAAATCAGTCATAGGAGTGAAAACATACTTCAAGAACAGAGAGTGACTACTGAAAATTCTGCAGGTGTTGCTCACGAGGAGCAGGATCAACGGCAGATTGTTGCCACTAACTCGGATGTGTCTGGTTTGTCCGTCTCTAATGAACGATTGAAAGAAATTTCCTTGTTGGAGATGGAGAACCTTGCAGATGTGCAAATACATGATCTGTTTGAATGTCAAAAGTGCAGCATGACCTTTGATGAGAAGGATGCGTACTTGGAGCACCTGTTGTCTATTCATCAGAAGACGACGAGGCGGTATCGACTTGGCTCATCTGTTTCAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGTCATAAAGTGTTTTTGGAAAAGCGTCGCTACAATAGTCACGTTGGGATACATGTTAGGAATTATTTGAGGCAAGCTGAAGATTTGCCTGGTCAGCCTAATAATAATGTCTTGAGAGCAGAAGAGTCTCCAGTCACAGATGAGACGCCTTCAAGGATCTCTAAGATGGATGCCCTCATCGAAATTGCTCAAAACTCTATTGTGGAGGATTCTGTCATGGAACCATGTTCTTCTAAGCTGAATACGATTCATGTTTCAGAAATTGCAGCTGGTGACTTAGATGTAGACATAAATGTTGAGTCTCCGATCAGTGAACAACAAATGGAAGAGAGCTTGATTGACCCAAATGTAGTTCGCGATTTAAACCAGCAAGATAGTCCTCGTTTACCCATGGGTGGAACAATAGAGGAAATTGACAACGATAACCGAGTTATTAATGCAAAGATGTCTAGTTTTCTAGATAACACAGGCTTGTTTTCTGTAAATAATAAAAATGGTGATGCACCTGATACTTCTAAAGGTAAAGGTGATGCGGCACTGACTGTTGAGGGATTTGATCATTCTGTGATTGATCTGCAAGGATTTTCTGAAAGCCCGTCGCTTCCTTCATCTGGGAATCACATGAAACCTGGATATGAAAAGAGTGAAAATTCTGGTTGCATTAATACTAAGGGGGATCTTAAACTTGACGAAAACAATAATAATAAGAGTGACTTGAAAATTGGTTTATATGGCTGCAAGGATGTACCCGGTGTTGCTAATGTTCAAGTGACAGCAATGCCAACTTCTAAAGAAAATGTGGTCCAATCTATGGTTTCTAACCCCTCTGTATCCCCAGAACAATCTATGGATTCTTTTTCTGCATTCAGCTCGGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATTGGTTCTCTTGAGTATGATTTTGCAAGTGTTCAAGATGTGTCAGCTGAATTGGCAAATAACATAGTGGTGCAAGGGACATGTGCATCACAAGAAGTTATGTTAAATGTGGATGACAATAATCAGCTCACAACCACGTGTGTATGGTGTGGAATAGAGTTTAACCACGATGCTGTTAATTCTGAAATACAATCAGATTCTGTTGGATTCATGTGTCCAGTTTGCAAGGCAAAAATATCTGGTCAAATCAATGTGTTGGACAGTGGATCACCAAATGCTGGCCATGTTTAG 2379 0.4224 MKEEEESTVKMEWLTSIDSTTLSHSELQALSLSSLSSFDLKSTRQIVTPKIDPSTFNHSAGSHRQTYSRSHRRCRAPPLLPTPVLPSDHRIIVDYLKQFIKEDPKFDQVELLQPVVPSISPPVILSGEVRKRKRGRKPKMKVHLDDCYRGMEIVNKNGVAVDLNVLSMVEHPFAAEIARRTEGLSKEEELLGFLSDLVGQWGSRRRKRRIVDAADFGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPSGQPFVSCREVSSYLQSRFGHSDLQLQISHRSENILQEQRVTTENSAGVAHEEQDQRQIVATNSDVSGLSVSNERLKEISLLEMENLADVQIHDLFECQKCSMTFDEKDAYLEHLLSIHQKTTRRYRLGSSVSDGVIIKDGKFECQFCHKVFLEKRRYNSHVGIHVRNYLRQAEDLPGQPNNNVLRAEESPVTDETPSRISKMDALIEIAQNSIVEDSVMEPCSSKLNTIHVSEIAAGDLDVDINVESPISEQQMEESLIDPNVVRDLNQQDSPRLPMGGTIEEIDNDNRVINAKMSSFLDNTGLFSVNNKNGDAPDTSKGKGDAALTVEGFDHSVIDLQGFSESPSLPSSGNHMKPGYEKSENSGCINTKGDLKLDENNNNKSDLKIGLYGCKDVPGVANVQVTAMPTSKENVVQSMVSNPSVSPEQSMDSFSAFSSDKGFQELRLEDIGSLEYDFASVQDVSAELANNIVVQGTCASQEVMLNVDDNNQLTTTCVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINVLDSGSPNAGHV 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00222 792 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Trre4g00222 792 Gene3D Classic Zinc Finger 319 417 - -
Trre4g00222 792 ProSiteProfiles Zinc finger C2H2 type domain profile. 343 371 IPR013087 -
Trre4g00222 792 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 3 630 IPR037472 -
Trre4g00222 792 SMART c2h2final6 343 366 IPR013087 -
Trre4g00222 792 SMART c2h2final6 390 412 IPR013087 -
Trre4g00222 792 MobiDBLite consensus disorder prediction 51 81 - -
Trre4g00222 792 SUPERFAMILY DNA-binding domain 216 271 IPR016177 GO:0003677
Trre4g00222 792 Gene3D - 200 309 - -
Trre4g00222 792 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 210 282 IPR001739 GO:0003677
Trre4g00222 792 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 417 IPR013087 -
Trre4g00222 792 MobiDBLite consensus disorder prediction 590 612 - -
Trre4g00222 792 ProSitePatterns Zinc finger C2H2 type domain signature. 345 366 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00222 Trre-Chr4 1504761 1508300 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre4g00222 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00222 - - lang:109329666 909.057