Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00210 ATGGCGGAGCGTCCTTCTTATGGATTAGGTCCTCGATTAGATATTCAGCAATTACAGTTTGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGCTGTTTCATATCACATCAGAACCTCATATAAGGCCACCAAGTGGTTCACTTTTTCTTTTTGACCGGAAGGTTTTAAGATACTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAATTAAAGGTCGGAAGTGTTGATGCGTTACACTGCTACTACGCACATGGAGAAGAAAACGAAAATTTTCAAAGGCGAAGCTATTGGTTGCTTGAACAGGATACACACATAGTATTTGTCCACTACTTGGAAGTTAAGGGTAACAAGTCAAATATTGGAGGAAGCACCGATAGTAGTGATGGGGTCATATCAGATTCCCAAAAGGTCAACTCTCCGTCGTCTGGTTTTCCCACAACTTATAGTGGTGTGCCTTCACTGAGTACAGATTCCATGAGCCTAACTAGCAGCTTGGCATCTTTACGTGAAGATGCTGATTCAGGTGATCATGGACAGTCTTCAGTTTCTGGAACGGATTATATCCCTCTTTTTGACAGTCGTCAGCCTCTCCAACCAAATTGGCAGATTCCTTTTGAAGACAACACAGGGCACATGCCAACTTTAACTCAATCATTGAGTTTGGAATTTGGATCTGATTATGGCACTGGTTTACTAGGGAATGAAATTTATAATGAAAGTTTTGAAATTGATCCTGTCATGTTTAGTTTTCATGGTGAGCCAAAAGAGAAGCTTGCACAGCAAAACTATCTGGGAGAGGCGGTAGATGGGCACCCACAAGTTGACCTTAAGTCCAATTCCGCAAATGAAGTTCCTAGTGAAGAAACTGTTAACTATCCCTTATCTGTGAGGCGCACATTATTGGATAGAGATGAGAGCTTGAGGAAGGTTGATAGCTTCAATCGATGGATTACTAAAGCACTTGGAGAGGTGGATAATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGTGGGCATGTGATTGATGAAACCTCACTGAGCCCATCTCTGTCTCAGGACCAACTGTATAGCATAAATGATTTTTCACCTAAATGGGCTGATGCAGAGTCAGACACTGAGGTGTTGATTATTGGATCTTTTTTGAAGAGTCAACCAGATGTTACAACCTATAATTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGACGTTGTAGCTAATGGAATTTTGTGCTGTCAAGCTCCTCCTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGCAGCGAGGTGCGTGAATTTGATTTCAGAGAGGGCTATTCTAGAAATGTAGATTATACAGAGTTTTTCAACAGTTCGAATGAAATGCTGCTTCATTTGCGACTGGAGGAGTTTCTTTCTTCGAAACCAGTGTACCCTTCAAATCAAACCTTTGAGGGTGATACGGAGAAAAGAAACTTAATTCTTAAGCTTATTTCACTGAGAGAGGAAGAAGAATATTCAATCAAGGAAGAGCGGGCTGTGGAGATGGATATATCACGACACAAGGTCAAGAAGCATCTGTTTCACAGGCAGGTTAAAGAGAAACTGTACTCATGGCTTCTTCACAAGGTAACTGAGAGTGGTAAAGGGCCAAATGTGTTAGATAAGGATGGGCAGGGTGTTCTACATTTAGCAGCTGTTCTTGGTTATGACTGGGCAATAACCCCAATTTTAACTGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACGGCTTTACATTGGGCGGCATCCTGTGGCAGAGAGCGGACAGTTGCTGCCCTTGTATCCGTGGGTGCAGATTGTGGAGCATTGACGGATCCATCTCCAGAATTTCCTTCAGGTAGAACAGCTGCAGATCTTGCATCTAGCAATGGGCACAAAGGACTCTCTGGTTTTCTTGCTGAGTCTTCATTAACCAGCCACCTTGAAGCCCTCACAGTGGATGATCAACAAAAAGGTGGTCTGCAAGAAGTTTTAGGAACGAAAGCAGTGCAGACAGTTTCGGAGCGAACTGCAACACCTGTCTATAGTGATATGCCTGATGCCCTCTGCCTTAAGGATTCTCTAACCGCTGTGCGTAATGCTACACAAGCTGCTGATCGCATACATCAAGTGTTCAGAATGCAGTCCTTTCAGAGGAAGCAGTTAACTCAGTATGAGGATGATGAGTTTGGTTTGTTAGATCAGCAGGCTCTTTCCCTACTAGCTTCTAAGGCATCCAAGGCAGGACAAGGAGATGGCTTAATCAATAATGCTGCAACTCAGATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTCTTGATCATCCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACTGTCATCTGGTCCGTGGGAATCCTGGAGAAGATTATATTACGATGGAGACGCAAGGGTAGTGGTCTACGTGGGTTTCGACCAGAAACCCTTAATAAAGCCCCCAGTCAACAAAATGATTCTCCGAAAGAGGATGATTATGATTATCTAAAGGAAGGACGAAAACAAAAAGAGGAAAAGATCGAAAAGGCCCTTTCTAGAGTGAAGTCCATGGTTCAGTATCCGGAGGCACGTGCTCAATACCGGCGCGTACTAAATGTTGTTGAAGACTTCCGTCAAAAGAAGGATTGTAATATGGGTTTAATCAGTTCTGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCAATGCCATAGCATTTGATTCTCTGTAG 2913 0.425 MAERPSYGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYRLFHITSEPHIRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDALHCYYAHGEENENFQRRSYWLLEQDTHIVFVHYLEVKGNKSNIGGSTDSSDGVISDSQKVNSPSSGFPTTYSGVPSLSTDSMSLTSSLASLREDADSGDHGQSSVSGTDYIPLFDSRQPLQPNWQIPFEDNTGHMPTLTQSLSLEFGSDYGTGLLGNEIYNESFEIDPVMFSFHGEPKEKLAQQNYLGEAVDGHPQVDLKSNSANEVPSEETVNYPLSVRRTLLDRDESLRKVDSFNRWITKALGEVDNLNMQSSPGISWSTDECGHVIDETSLSPSLSQDQLYSINDFSPKWADAESDTEVLIIGSFLKSQPDVTTYNWSCMFGEVEVPADVVANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDFREGYSRNVDYTEFFNSSNEMLLHLRLEEFLSSKPVYPSNQTFEGDTEKRNLILKLISLREEEEYSIKEERAVEMDISRHKVKKHLFHRQVKEKLYSWLLHKVTESGKGPNVLDKDGQGVLHLAAVLGYDWAITPILTAGVNINFRDVNGWTALHWAASCGRERTVAALVSVGADCGALTDPSPEFPSGRTAADLASSNGHKGLSGFLAESSLTSHLEALTVDDQQKGGLQEVLGTKAVQTVSERTATPVYSDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQYEDDEFGLLDQQALSLLASKASKAGQGDGLINNAATQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTVIWSVGILEKIILRWRRKGSGLRGFRPETLNKAPSQQNDSPKEDDYDYLKEGRKQKEEKIEKALSRVKSMVQYPEARAQYRRVLNVVEDFRQKKDCNMGLISSEETVDGVEDLIDIDMLLDDDNFNAIAFDSL 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00210 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 791 842 IPR027417 -
Trre4g00210 970 ProSiteProfiles Ankyrin repeat region circular profile. 617 643 - -
Trre4g00210 970 MobiDBLite consensus disorder prediction 862 883 - -
Trre4g00210 970 Gene3D - 792 838 - -
Trre4g00210 970 FunFam Calmodulin-binding transcription activator 2 791 839 - -
Trre4g00210 970 FunFam Calmodulin-binding transcription activator 2 377 473 - -
Trre4g00210 970 SMART iq_5 791 813 IPR000048 GO:0005515
Trre4g00210 970 SMART iq_5 814 836 IPR000048 GO:0005515
Trre4g00210 970 Pfam CG-1 domain 21 133 IPR005559 GO:0003677
Trre4g00210 970 Gene3D - 553 729 IPR036770 -
Trre4g00210 970 ProSiteProfiles Ankyrin repeat profile. 617 649 IPR002110 GO:0005515
Trre4g00210 970 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Trre4g00210 970 MobiDBLite consensus disorder prediction 139 171 - -
Trre4g00210 970 SUPERFAMILY E set domains 384 469 IPR014756 -
Trre4g00210 970 SMART CG_1_2 18 135 IPR005559 GO:0003677
Trre4g00210 970 SUPERFAMILY Ankyrin repeat 572 678 IPR036770 -
Trre4g00210 970 Gene3D Immunoglobulins 377 473 IPR013783 -
Trre4g00210 970 Pfam IPT/TIG domain 384 458 IPR002909 -
Trre4g00210 970 Pfam IQ calmodulin-binding motif 794 812 IPR000048 GO:0005515
Trre4g00210 970 Pfam IQ calmodulin-binding motif 817 836 IPR000048 GO:0005515
Trre4g00210 970 ProSiteProfiles IQ motif profile. 815 839 IPR000048 GO:0005515
Trre4g00210 970 ProSiteProfiles IQ motif profile. 792 821 IPR000048 GO:0005515
Trre4g00210 970 ProSiteProfiles CG-1 DNA-binding domain profile. 15 140 IPR005559 GO:0003677
Trre4g00210 970 Pfam Ankyrin repeats (3 copies) 563 645 IPR002110 GO:0005515
Trre4g00210 970 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 930 - -
Trre4g00210 970 SMART ANK_2a 617 646 IPR002110 GO:0005515
Trre4g00210 970 SMART ANK_2a 656 685 IPR002110 GO:0005515
Trre4g00210 970 SMART ANK_2a 584 613 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00210 Trre-Chr4 1417698 1433421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00210 1 931 CAMTA Transcription Factor Family AT5G64220 52.786 0.0 1010
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre4g00210 CG-1 1.5e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00210 K21596 - gmx:100818124 1213.36