Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00207 ATGGATTCTGTTGTGACGCAAAAAATGCTTTTCAAACCTCTCAATCTGAATTTCCCCTCCATCAGAGCCGGCATCCAAAAGCAGCTGAACCACCGCGTTCTCTTCCACAACTCTATTATGCCGTTGCGGTGCTCAGCCTCAACTCCTTCTACTTCTTCTGAAGATGCTATTGTTCTCAATGTTCGGGGAATGATGTGTGAGGGATGTGCATCTAGCGTAAAAAAGATTCTAGAAACTCAACCACAAGTGTTATCTGCTACTGTGAATCTAACATCAGAGACAGCACTAGTTTCCGTATCGCCTTTGTTACCTGAAGAGAAAACTTCACCAAATTGGCAAAAGGAGTTAGGAGAAACACTTGCTCACCATTTAACTACATGTGGTTTTACTTCTGCCCTTAGAGTGGCAGGTCAGGAAGATAGCGACTAA 429 0.4359 MDSVVTQKMLFKPLNLNFPSIRAGIQKQLNHRVLFHNSIMPLRCSASTPSTSSEDAIVLNVRGMMCEGCASSVKKILETQPQVLSATVNLTSETALVSVSPLLPEEKTSPNWQKELGETLAHHLTTCGFTSALRVAGQEDSD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00207 142 SUPERFAMILY HMA, heavy metal-associated domain 54 101 IPR036163 GO:0046872
Trre4g00207 142 CDD HMA 58 107 IPR006121 GO:0046872
Trre4g00207 142 ProSiteProfiles Heavy-metal-associated domain profile. 55 125 IPR006121 GO:0046872
Trre4g00207 142 Pfam Heavy-metal-associated domain 58 101 IPR006121 GO:0046872
Trre4g00207 142 ProSitePatterns Heavy-metal-associated domain. 61 90 IPR017969 GO:0046872
Trre4g00207 142 Gene3D - 54 133 - -
Trre4g00207 142 FunFam Copper-transporting ATPase PAA1, chloroplastic 55 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00207 Trre-Chr4 1410317 1412158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00207 50 136 Primary Pumps ATPases AT4G33520 62.069 1.50e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00207 K17686 - mtr:11435142 172.94