Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00206 ATGGATTCTGTTGTGACGCAAAAAATGCTTTTCAAACCTCTCAATCTGAATTTCCCCTCCATCAGAGCCGGCATCCAAAAGCAGCTGAACCACCGCGTTCTCTTCCACAACTCTATTATGCCGTTGCGGTGCTCAGCCTCAACTCCTTCTACTTCTTCTGAAGATGCTATTGTTCTCAATGTTCGGGGAATGATGTGTGAGGGATGTGCATCTAGCGTAAAAAAGATTCTAGAAACTCAACCACAAGTGTTATCTGCTACTGTGAATCTAACATCAGAGACAGCACTAGTTTCCGTATCGCCTTTGTTACCTGAAGAGAAAACTTCACCAAATTGGCAAAAGGAGTTAGGAGAAACACTTGCTCACCATTTAACTACATGTGGTTTTACTTCTGCCCTTAGAGGTCAGGAAGATAGCGACTAA 423 0.4326 MDSVVTQKMLFKPLNLNFPSIRAGIQKQLNHRVLFHNSIMPLRCSASTPSTSSEDAIVLNVRGMMCEGCASSVKKILETQPQVLSATVNLTSETALVSVSPLLPEEKTSPNWQKELGETLAHHLTTCGFTSALRGQEDSD 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00206 140 CDD HMA 58 107 IPR006121 GO:0046872
Trre4g00206 140 Gene3D - 54 133 - -
Trre4g00206 140 SUPERFAMILY HMA, heavy metal-associated domain 54 101 IPR036163 GO:0046872
Trre4g00206 140 FunFam Copper-transporting ATPase PAA1, chloroplastic 55 133 - -
Trre4g00206 140 ProSiteProfiles Heavy-metal-associated domain profile. 55 125 IPR006121 GO:0046872
Trre4g00206 140 ProSitePatterns Heavy-metal-associated domain. 61 90 IPR017969 GO:0046872
Trre4g00206 140 Pfam Heavy-metal-associated domain 58 101 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00206 Trre-Chr4 1410317 1412158 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00206 50 134 Primary Pumps ATPases AT4G33520 62.353 7.44e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00206 - K17686 mtr:11435142 177.948