Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00205 ATGTCATCTTCAATTCTTGTAATCCAAATTCCAATAGCAATGGATTCTGTTGTGACGCAAAAAATGCTTTTCAAACCTCTCAATCTGAATTTCCCCTCCATCAGAGCCGGCATCCAAAAGCAGCTGAACCACCGCGTTCTCTTCCACAACTCTATTATGCCGTTGCGGTGCTCAGCCTCAACTCCTTCTACTTCTTCTGAAGATGCTATTGTTCTCAATGTTCGGGGAATGATGTGTGAGGGATGTGCATCTAGCGTAAAAAAGATTCTAGAAACTCAACCACAAGTGTTATCTGCTACTGTGAATCTAACATCAGAGACAGCACTAGTTTCCGTATCGCCTTTGTTACCTGAAGAGAAAACTTCACCAAATTGGCAAAAGGAGTTAGGAGAAACACTTGCTCACCATTTAACTACATGTGGTTTTACTTCTGCCCTTAGAGTGGCAGGTCAGGAAGATAGCGACTAA 468 0.4252 MSSSILVIQIPIAMDSVVTQKMLFKPLNLNFPSIRAGIQKQLNHRVLFHNSIMPLRCSASTPSTSSEDAIVLNVRGMMCEGCASSVKKILETQPQVLSATVNLTSETALVSVSPLLPEEKTSPNWQKELGETLAHHLTTCGFTSALRVAGQEDSD 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00205 155 FunFam Copper-transporting ATPase PAA1, chloroplastic 68 146 - -
Trre4g00205 155 Gene3D - 67 146 - -
Trre4g00205 155 ProSiteProfiles Heavy-metal-associated domain profile. 68 138 IPR006121 GO:0046872
Trre4g00205 155 ProSitePatterns Heavy-metal-associated domain. 74 103 IPR017969 GO:0046872
Trre4g00205 155 Pfam Heavy-metal-associated domain 71 114 IPR006121 GO:0046872
Trre4g00205 155 CDD HMA 71 120 IPR006121 GO:0046872
Trre4g00205 155 SUPERFAMILY HMA, heavy metal-associated domain 67 114 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00205 Trre-Chr4 1410317 1412197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00205 63 149 Primary Pumps ATPases AT4G33520 62.069 2.30e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00205 - K17686 mtr:11435142 184.496