Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00196 ATGGGGTTTTACCTTTTTGTCCTTCAACTTATTACTTTTTCAGTTCTTGCTATAGCTCAAGAAGAACCTAAAGGGGACCCCAATGATGCACAAAATAAATCTTCAGATAATAAAAACAATAGCAATTCCAATCTTTTATTATTAATTCTCAATGTGGTTCTTCTTCTAGCAATTATATTGCTATTGATTCTTTACTACAACACATCAAAAAAACTCAACAGAATAGTGAAAGGACACATTTACACATCTCATGAACAAGAGAAAGATGTTGAAACAAGTATTAATGTGAAGAGAGTTGAGATAGGAGAAGGGACAACAATGATGACAGTAGAAGAGAGAAAAGAGTTAATGTTTTTCAATGATGAGACAAAATTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAAGCATTGGGACATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAATAATGGACATAATATTGTTGTGAAGAGGTTAAGGGACTTGAAACCATTTACTAAGGAGGAATTTGCAAAGATAGTGAAAATTATTGCTGATCTTAAACATCCTAATTTGTTGCCTTTGCTTGCTTATTACTATTCAAGAGATGAGAAGCTTATGCTCTATAGATATGCTCAGAATGGAAATCTTTTCTCTAGACTTCATGATGGAAGAGATGGAAACAGGGTTCCATTCAATTGGAACTCAAGATTATTAGTGGCAAGAGGCGTGGCTAGAGCATTAGAGTACCTTCACCTCAACAACAAGATCCATAACATTGTCCCTCATGGAAATCTAAAGTCTTCAAATGTTCTATTTGATGAAAATGATTCGGTTCTTGTATCTGACTTTAGTCTTGCATCCTTAATAGCACAACCAATTGCAGCTCAACATATGGTTGTATACAAATCACCTGAATATGGATCTGCAAGAAAAGTTACAATGCAATCAGATGTTTGGAGCTATGGATCACTTTTAATAGAAATTCTAACTGGGAAAGTTTCTATGTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTAATAGAGCTGTGAGAGAAGAATGGACTGCTGAGATATTTGACAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCTGGGATGTTAAGGTTGTTGCAGATAGCAATGAGATGCATTGAGAGGTTTCCTGAGAAACGTCCTGAGATGAAAGAGGTAGTTAGAGAAGTTGAGAAAATACAACAAGTACATTTGATGTCTGAAGATGAGGATGATGTTTCTTGTGATAGGTCTCTAACTGATGATTCATTTTCAACAAGTAACTCAGGGATTTTTATTGGAGATTAA 1326 0.3537 MGFYLFVLQLITFSVLAIAQEEPKGDPNDAQNKSSDNKNNSNSNLLLLILNVVLLLAIILLLILYYNTSKKLNRIVKGHIYTSHEQEKDVETSINVKRVEIGEGTTMMTVEERKELMFFNDETKFQMGELLRASAEALGHGIMGNSYKAMLNNGHNIVVKRLRDLKPFTKEEFAKIVKIIADLKHPNLLPLLAYYYSRDEKLMLYRYAQNGNLFSRLHDGRDGNRVPFNWNSRLLVARGVARALEYLHLNNKIHNIVPHGNLKSSNVLFDENDSVLVSDFSLASLIAQPIAAQHMVVYKSPEYGSARKVTMQSDVWSYGSLLIEILTGKVSMCSAPQGTNGVDLCSWVNRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQVHLMSEDEDDVSCDRSLTDDSFSTSNSGIFIGD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00196 441 Gene3D Transferase(Phosphotransferase) domain 1 208 429 - -
Trre4g00196 441 Pfam Protein tyrosine and serine/threonine kinase 136 402 IPR001245 GO:0004672|GO:0006468
Trre4g00196 441 ProSiteProfiles Protein kinase domain profile. 132 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00196 441 SUPERFAMILY Protein kinase-like (PK-like) 136 408 IPR011009 -
Trre4g00196 441 Gene3D Phosphorylase Kinase; domain 1 98 207 - -
Trre4g00196 441 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 38 408 IPR046959 -
Trre4g00196 441 SMART serkin_6 132 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00196 Trre-Chr4 1339898 1342412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00196 45 408 Receptor kinase-like Gene Family AT4G31250 37.975 5.63e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre4g00196 PK_Tyr_Ser-Thr 1.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00196 - - mtr:11421603 737.258