Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00193 ATGGAGAGTAGTTTGTTTAAGGTTGTGATTCTTTTGCTTGTTTTAGGTATTGTGAACATACAAGTCCATAGCCAAGAGACATATGTAGGATTCTATTCTAGTACATGTCCTCAAGCTGAATCAATTGTTAAGTCCACAGTTACATCTCATGTTAACTCTGATTCTTCTTTGGCTCCTGGTTTACTTAGGTTGCATTTCCATGATTGTTTTGTCCGAGGTTGTGATGCCTCTGTTCTCATCGCTGGCCTAGGCACCGAGAGAACTGCATTTCCGAACCTTGGTTTAAGAGGTTTTGAAGTTATTGATGATGCTAAGACAAAGCTCGAAAATGTGTGTCCCGGTGTTGTCTCTTGTGCTGATATCCTTGCCCTTGCTGCTCGTGATTCTGTTGTTCTGAGTGGTGGACTGAGTTGGAAAGTGCCTACTGGACGTAGAGATGGACGTGTGTCACTGGCTTTAGATGTTAATAATTTGCCTGCTCCTGACGATTCTGTCGATGTGCAGAAACGAAAATTTGAAGAAAAAGGCCTTAACACTCAAGACCTTGTCACATTAGTTGGTGGACATACAATTGGAACTGTGGCATGTCAATTCTTCAATAAGAGATTGTACAACTTCACAACAAATGTTGCTTCTGACCCTTCCATTGACCCTTCATTTCTTTCCCAATTACAAACACTTTGCCCTCAAAACAATGGTGCTACAAATAGAGTTGCATTTGATACTGGAAGTCAAAACAAATTTGATAATTCTTACTATGCTAATTTGAAGAATGGACGTGGAATTCTTCAATCTGATCAAGCACTATGGAATGATGCTTCCACAAAGACCTTTGTGCAAAGATACTTGGGTTTAAGAGGGTTGCTTGGATTAACATTTAATGTTGAATTTGGAACATCAATGGTTAAGATGAGTAACATTGAAGTGAAGACAGGTTCTAATGGTGAAATTCGCAATATATGTTCTGCTTTCAACTAA 978 0.3926 MESSLFKVVILLLVLGIVNIQVHSQETYVGFYSSTCPQAESIVKSTVTSHVNSDSSLAPGLLRLHFHDCFVRGCDASVLIAGLGTERTAFPNLGLRGFEVIDDAKTKLENVCPGVVSCADILALAARDSVVLSGGLSWKVPTGRRDGRVSLALDVNNLPAPDDSVDVQKRKFEEKGLNTQDLVTLVGGHTIGTVACQFFNKRLYNFTTNVASDPSIDPSFLSQLQTLCPQNNGATNRVAFDTGSQNKFDNSYYANLKNGRGILQSDQALWNDASTKTFVQRYLGLRGLLGLTFNVEFGTSMVKMSNIEVKTGSNGEIRNICSAFN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00193 325 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 FunFam Peroxidase 159 304 - -
Trre4g00193 325 FunFam Peroxidase 30 170 - -
Trre4g00193 325 CDD secretory_peroxidase 29 324 IPR033905 GO:0004601|GO:0042744
Trre4g00193 325 Pfam Peroxidase 43 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 PANTHER PEROXIDASE 25-RELATED 12 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 ProSiteProfiles Plant heme peroxidase family profile. 26 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Trre4g00193 325 Gene3D Peroxidase, domain 2 159 304 - -
Trre4g00193 325 Gene3D - 30 325 - -
Trre4g00193 325 SUPERFAMILY Heme-dependent peroxidases 29 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre4g00193 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00193 Trre-Chr4 1321956 1323348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00193 8 325 Peroxidase AT2G41480 62.382 1.29e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00193 K00430 - gmx:100820620 488.034