Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00185 ATGGAAGAAATAAAAAGCAATCCTTCTTCACGTATACATGGTGATGATATTCATCCACATATTCACAAAGTTGCAAGTCCTCCTAAGCAGACACTTTTCCAAGATATCAAACATAATTTCAATGAAACTTTTTTCCCTGATGACCCTTTTGGCAAGTTTAAGAATCAAACAGTATCAAGAAAGTTTGTTCTTGGTTTACGATCTGTTTTTCCGATTTTTGATTGGGGAAGAGGTTACAACCTTAAAAGTTTTAAGGGTGATTTGATTGCTGGACTCACCATTGCTAGTCTTTGCATTCCTCAGGATATTGCATATGCTAGTCTTGCACATTTGGATCCACATTATGGACTATATACTAGTTTTGTTGCACCTCTTGTGTATGCTTTCATGGGAAGTTCAAGAGATATTGCCATAGGACCAGTAGCTGTGGTGTCCCTCTTGCTTGGAACCTTGCTTACAGATGAGATCAGTGATTACAAAAGTCATGAATATCTGCGTCTCACATTTACCGCAACTTTCTTTGCAGGAATCACTCAAATGGCACTTGGAATTTTAAGACTTGGTTTCTTGATTGATTTTCTATCTCATGCTGCAATTGTTGGATTCATGGGTGGAGCTGCCATTACTATTGCACTTCAACAGCTTAAAGGTCTTCTTGGCATAAAGCACTTCACTACAAAAACTGATATTATTTCTGTCATGAAATCCGTTTTTAGTGCCGCCCACCATGGGGCTAAGAAGAACAAGAAACTCTTTTGGGTGGCTGCAATATCTCCTATGATATGTGTTATAGTGTCTACTTTTTCTGTCTACATTACAAGAGCAGACAAAAAAGGAGTAGCAATTGTGAAACATATCGAGAGACATGTGAATCCAGCATCTGCTAGTGAAATATATTTCAGTGGAAATTATTTAAGTGCTGGTATTAGAATTGGTGTGATTGCTGGTATGGTAGCACTCACGGAAGCTGTGGCCATTGGAAGAACATTTGCTGCTATGAAAGACTATTCAATTGATGGTAACAGAGAAATGGTGGCACTAGGAACAATGAACGTTATTGGTTCCATGACATCTTGTTATGTTGCTACAGGATCGTTTTCTCGCTCAGCTGTGAATTATATGGCTGGTTGTAAAACTGCTGTATCAAACATAGTTATGTCCTTTGTGTTGTTGTTAACTTTGTTACTGATTACACCGCTATTCAAGTACACTCCAAATGCAGTGCTTGCCTCAATTATCATAGCTGCTGTGTTGAACTTGATTGACATTAAAGCAGCTATTCTTCTTTGGAAGATTGACAAATTTGATTTTCTAGCTTGCATGGGAGCCTTCTTTGGTGTCGTCTTCCATAGTGTCGAGATTGGCCTTCTAATCGCGGTAGCAATATCTTTCACGAAAATCCTTTTACAAGTCACAAGGCCGAGGACTGTAGTACTTGGGAAGCTTTCAGGGACAACTGTTTATAGGAACATCCTGCAATATCCCAAAGCAGAACAGATTCCTGGCATGCTGATTGTCAGGATTGACTCTGCAATCTACTTCTCAAACTCCAACTACATCAAGGACAGAATATTGAAGTGGCTGACTGATGAAGAGATTCTAAGGACATCAAGTGAATATCCAAGTATTCAGTATCTCATCGTTGAAATGTCGCCTGTTACTGATATTGACACTAGTGGCATCCATGCCTTTGAAGATTTACTTAAAAGCCTCAAGAAAAGAGATGTTCAGCTTATCTTGGCAAATCCGGGACCAATTGTAATTGAAAAGCTACATGCATCGAAGGTATCAGATTTAATAGGGGAAGATAAAATATTTCTAACAGTAGGTGATGCTGTTGCAACTTTTGGTCCAAAGGGTGCAGATTTATGA 1872 0.3884 MEEIKSNPSSRIHGDDIHPHIHKVASPPKQTLFQDIKHNFNETFFPDDPFGKFKNQTVSRKFVLGLRSVFPIFDWGRGYNLKSFKGDLIAGLTIASLCIPQDIAYASLAHLDPHYGLYTSFVAPLVYAFMGSSRDIAIGPVAVVSLLLGTLLTDEISDYKSHEYLRLTFTATFFAGITQMALGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGLLGIKHFTTKTDIISVMKSVFSAAHHGAKKNKKLFWVAAISPMICVIVSTFSVYITRADKKGVAIVKHIERHVNPASASEIYFSGNYLSAGIRIGVIAGMVALTEAVAIGRTFAAMKDYSIDGNREMVALGTMNVIGSMTSCYVATGSFSRSAVNYMAGCKTAVSNIVMSFVLLLTLLLITPLFKYTPNAVLASIIIAAVLNLIDIKAAILLWKIDKFDFLACMGAFFGVVFHSVEIGLLIAVAISFTKILLQVTRPRTVVLGKLSGTTVYRNILQYPKAEQIPGMLIVRIDSAIYFSNSNYIKDRILKWLTDEEILRTSSEYPSIQYLIVEMSPVTDIDTSGIHAFEDLLKSLKKRDVQLILANPGPIVIEKLHASKVSDLIGEDKIFLTVGDAVATFGPKGADL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00185 623 Gene3D STAS domain 473 617 IPR036513 -
Trre4g00185 623 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g00185 623 Pfam STAS domain 494 612 IPR002645 -
Trre4g00185 623 SUPERFAMILY SpoIIaa-like 495 617 IPR036513 -
Trre4g00185 623 ProSiteProfiles STAS domain profile. 493 616 IPR002645 -
Trre4g00185 623 PANTHER SULFATE TRANSPORTER 31 614 IPR001902 GO:0016020|GO:0055085
Trre4g00185 623 NCBIfam sulfate permease 244 612 IPR001902 GO:0016020|GO:0055085
Trre4g00185 623 Pfam Sulfate permease family 84 441 IPR011547 GO:0016020
Trre4g00185 623 CDD STAS_SulP_like_sulfate_transporter 494 609 - -
Trre4g00185 623 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271|GO:0008272
Trre4g00185 623 FunFam Sulfate transporter 31 473 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00185 Trre-Chr4 1262924 1266163 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00185 19 622 Inorganic Solute Cotransporters AT1G22150 70.016 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00185 K17470 - gmx:100784124 985.326