Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00184 ATGGAAGAAATAAAAAGCAATCCTTCTTCACGTATACATGGTGATGATATTCATCCACATATTCACAAAGTTGCAAGTCCTCCTAAGCAGACACTTTTCCAAGATATCAAACATAATTTCAATGAAACTTTTTTCCCTGATGACCCTTTTGGCAAGTTTAAGAATCAAACAGTATCAAGAAAGTTTGTTCTTGGTTTACGATCTGTTTTTCCGATTTTTGATTGGGGAAGAGGTTACAACCTTAAAAGTTTTAAGGGTGATTTGATTGCTGGACTCACCATTGCTAGTCTTTGCATTCCTCAGGATATTGCATATGCTAGTCTTGCACATTTGGATCCACATTATGGACTATATACTAGTTTTGTTGCACCTCTTGTGTATGCTTTCATGGGAAGTTCAAGAGATATTGCCATAGGACCAGTAGCTGTGGTGTCCCTCTTGCTTGGAACCTTGCTTACAGATGAGATCAGTGATTACAAAAGTCATGAATATCTGCGTCTCACATTTACCGCAACTTTCTTTGCAGGAATCACTCAAATGGCACTTGGAATTTTAAGACTTGGTTTCTTGATTGATTTTCTATCTCATGCTGCAATTGTTGGATTCATGGGTGGAGCTGCCATTACTATTGCACTTCAACAGCTTAAAGGTCTTCTTGGCATAAAGCACTTCACTACAAAAACTGATATTATTTCTGTCATGAAATCCGTTTTTAGTGCCGCCCACCATGGGTGGAATTGGGAGACAATAGTAATTGGAGTATCATTCTTGGCTTTTCTTCTTACAACCAAATATATTGCTAAGAAGAACAAGAAACTCTTTTGGGTGGCTGCAATATCTCCTATGATATGTGTTATAGTGTCTACTTTTTCTGTCTACATTACAAGAGCAGACAAAAAAGGAGTAGCAATTGTGAAACATATCGAGAGACATGTGAATCCAGCATCTGCTAGTGAAATATATTTCAGTGGAAATTATTTAAGTGCTGGTATTAGAATTGGTGTGATTGCTGGTATGGTAGCACTCACGGAAGCTGTGGCCATTGGAAGAACATTTGCTGCTATGAAAGACTATTCAATTGATGGTAACAGAGAAATGGTGGCACTAGGAACAATGAACGTTATTGGTTCCATGACATCTTGTTATGTTGCTACAGGATCGTTTTCTCGCTCAGCTGTGAATTATATGGCTGGTTGTAAAACTGCTGTATCAAACATAGTTATGTCCTTTGTGTTGTTGTTAACTTTGTTACTGATTACACCGCTATTCAAGTACACTCCAAATGCAGTGCTTGCCTCAATTATCATAGCTGCTGTGTTGAACTTGATTGACATTAAAGCAGCTATTCTTCTTTGGAAGATTGACAAATTTGATTTTCTAGCTTGCATGGGAGCCTTCTTTGGTGTCGTCTTCCATAGTGTCGAGATTGGCCTTCTAATCGCGGTAGCAATATCTTTCACGAAAATCCTTTTACAAGTCACAAGGCCGAGGACTGTAGTACTTGGGAAGCTTTCAGGGACAACTGTTTATAGGAACATCCTGCAATATCCCAAAGCAGAACAGATTCCTGGCATGCTGATTGTCAGGATTGACTCTGCAATCTACTTCTCAAACTCCAACTACATCAAGGACAGAATATTGAAGTGGCTGACTGATGAAGAGATTCTAAGGACATCAAGTGAATATCCAAGTATTCAGTATCTCATCGTTGAAATGTCGCCTGTTACTGATATTGACACTAGTGGCATCCATGCCTTTGAAGATTTACTTAAAAGCCTCAAGAAAAGAGATGTTCAGCTTATCTTGGCAAATCCGGGACCAATTGTAATTGAAAAGCTACATGCATCGAAGGTATCAGATTTAATAGGGGAAGATAAAATATTTCTAACAGTAGGTGATGCTGTTGCAACTTTTGGTCCAAAGGGTGCAGATTTATGA 1938 0.386 MEEIKSNPSSRIHGDDIHPHIHKVASPPKQTLFQDIKHNFNETFFPDDPFGKFKNQTVSRKFVLGLRSVFPIFDWGRGYNLKSFKGDLIAGLTIASLCIPQDIAYASLAHLDPHYGLYTSFVAPLVYAFMGSSRDIAIGPVAVVSLLLGTLLTDEISDYKSHEYLRLTFTATFFAGITQMALGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGLLGIKHFTTKTDIISVMKSVFSAAHHGWNWETIVIGVSFLAFLLTTKYIAKKNKKLFWVAAISPMICVIVSTFSVYITRADKKGVAIVKHIERHVNPASASEIYFSGNYLSAGIRIGVIAGMVALTEAVAIGRTFAAMKDYSIDGNREMVALGTMNVIGSMTSCYVATGSFSRSAVNYMAGCKTAVSNIVMSFVLLLTLLLITPLFKYTPNAVLASIIIAAVLNLIDIKAAILLWKIDKFDFLACMGAFFGVVFHSVEIGLLIAVAISFTKILLQVTRPRTVVLGKLSGTTVYRNILQYPKAEQIPGMLIVRIDSAIYFSNSNYIKDRILKWLTDEEILRTSSEYPSIQYLIVEMSPVTDIDTSGIHAFEDLLKSLKKRDVQLILANPGPIVIEKLHASKVSDLIGEDKIFLTVGDAVATFGPKGADL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00184 645 Pfam Sulfate permease family 84 463 IPR011547 GO:0016020
Trre4g00184 645 Pfam STAS domain 516 634 IPR002645 -
Trre4g00184 645 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g00184 645 FunFam Sulfate transporter 31 495 641 - -
Trre4g00184 645 PANTHER SULFATE TRANSPORTER 31 636 IPR001902 GO:0016020|GO:0055085
Trre4g00184 645 NCBIfam sulfate permease 71 634 IPR001902 GO:0016020|GO:0055085
Trre4g00184 645 ProSiteProfiles STAS domain profile. 515 638 IPR002645 -
Trre4g00184 645 Gene3D STAS domain 495 639 IPR036513 -
Trre4g00184 645 SUPERFAMILY SpoIIaa-like 517 639 IPR036513 -
Trre4g00184 645 CDD STAS_SulP_like_sulfate_transporter 516 631 - -
Trre4g00184 645 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00184 Trre-Chr4 1262924 1266163 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00184 19 644 Inorganic Solute Cotransporters AT1G22150 72.249 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00184 K17470 - gmx:100784124 1038.48