Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00176 ATGGAGACAGTGACTTCATTTTCTCAATATTCCTTTCTTTTTTGGGCAATTTTGATGCTTCATTTTCTGCTTAAAGCTTCCTCAAATCCAGAAGGTGATGCCCTGACTGCATTGAAAAGCAACTTGAATGATCCTAAAAATGCTCTTCAAAGTTGGGATACTACCCTTGTCAATCCTTGCACATGGTTTCATGTTGAATGCAATGCTGATAAAAGTGTGACCCGCGTTGATCTTGGAAATATGGACCTTTCTGGTACACTGGTTTCAGATCTTGGTGATCTCTCAAATTTGAAATCTTTGGCACTTTATAATAATAATATAACAGGCACAATCCCAGAAGAGCTAGGGAATTTGGCAAGCTTGGAGAGTTTGGATCTTTACTTGAACAATTTAAGTGGTACTATACCTGATACATTGGGCAAGCTTCAAAAACTACGTTCCCTGCGTCTCAATAATAACACCTTGACTGGCCGCATTCCCACTTCATTGACAAATATTTCAACGCTGCAAGTTCTTGACCTCTCAAGCAACAATCTAGAAGGGGATGTTCCAGTGACTGGTTCATTTTTATTATTTACCCCTGTCAGTTATCATAATAATCCTCGCTTGAAACAACCAAAAATCATTCCTACACCACTTTCTCCACCATCACCAGCTTCTTCAGGTACCACTAATCCTGGAGTTATTGCTGGAGGAGTTGCTGTCGGTGCTGCTCTATTGTTTGCTGCCCCTGCAATTGCACTTATTTATTGGCGCCGAAAAAGAACACCACAAGATCATTTCTATGACGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCGCTACATGAGCTTCTAGTAGCAACAGATAACTTCCGTAACGAAAACATTCTAGGTAGAGGTGGATTCGGAAAGGTTTATAAAGGGCGCTTAGCTGATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGTGCACAGGGTGGAGAGCTGCAATTTCAGACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTTGTGGTTTTTGCATGACAGCTACCGAACGTTTGCTTGTGTATCCTTTGATGGCTAATGGAAGCGTAGCATCATGTTTACGAGAACGCAATGACTCTCAACCGCTACTTGAGTGGTCAATGCGGAAGAATATTGCGCTTGGAGCTGCCAGGGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGATGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAGGGTTATGAATTACAAAGATACTCATGTTACTACTGCTGTTCGTGGTACGCTTGGGCATATAGCACCTGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGTGTGACTCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTTGCACGTCTTGCTAGTGATGATGATGTGATGTTGCTTGATTGGGTTAAAGGACTTCTCACAGACAAGAAGTTGGAAACACTGGTAGATGCAGAATTAAAAGGAAATTATGATGATGATGAGGTAGAGCAGTTATTCCAAGTTGCTTTACTATGCACACAAGGGTCCCCTATGGAAAGACCAAAGATGTCCGAGGTGGTGAGAATGCTAGAAGGCGATGGTTTGGCCGAAAAATGGGAGCAATGGCAGAAAGAAGAAACGTATCGACAAGATTTTAGCAGCAATCACATGCATTACCCTAATGCAAATTGGATAGTGGTAGATTCAACTTCAAATATTCAGCCAGATGAACTCTCAGGCCCTAGATGA 1857 0.4168 METVTSFSQYSFLFWAILMLHFLLKASSNPEGDALTALKSNLNDPKNALQSWDTTLVNPCTWFHVECNADKSVTRVDLGNMDLSGTLVSDLGDLSNLKSLALYNNNITGTIPEELGNLASLESLDLYLNNLSGTIPDTLGKLQKLRSLRLNNNTLTGRIPTSLTNISTLQVLDLSSNNLEGDVPVTGSFLLFTPVSYHNNPRLKQPKIIPTPLSPPSPASSGTTNPGVIAGGVAVGAALLFAAPAIALIYWRRKRTPQDHFYDVPAEEDPEVHLGQLKRFSLHELLVATDNFRNENILGRGGFGKVYKGRLADGTLVAVKRLKEERAQGGELQFQTEVEMISMAVHRNLLRLCGFCMTATERLLVYPLMANGSVASCLRERNDSQPLLEWSMRKNIALGAARGLAYLHDHCDPKIIHRDVKAANILLDDEFEAVVGDFGLARVMNYKDTHVTTAVRGTLGHIAPEYLSTGKSSEKTDVFGYGVTLLELITGQRAFDLARLASDDDVMLLDWVKGLLTDKKLETLVDAELKGNYDDDEVEQLFQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEETYRQDFSSNHMHYPNANWIVVDSTSNIQPDELSGPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00176 618 FunFam Somatic embryogenesis receptor kinase 1 261 368 - -
Trre4g00176 618 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Trre4g00176 618 SUPERFAMILY Protein kinase-like (PK-like) 271 567 IPR011009 -
Trre4g00176 618 Gene3D Phosphorylase Kinase; domain 1 261 367 - -
Trre4g00176 618 ProSiteProfiles Protein kinase domain profile. 292 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00176 618 SMART serkin_6 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00176 618 Pfam Protein tyrosine and serine/threonine kinase 295 566 IPR001245 GO:0004672|GO:0006468
Trre4g00176 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 577 - -
Trre4g00176 618 Gene3D Ribonuclease Inhibitor 28 209 IPR032675 -
Trre4g00176 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Trre4g00176 618 FunFam Somatic embryogenesis receptor kinase 1 27 213 - -
Trre4g00176 618 SUPERFAMILY L domain-like 29 190 - -
Trre4g00176 618 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Trre4g00176 618 Gene3D Transferase(Phosphotransferase) domain 1 369 586 - -
Trre4g00176 618 FunFam Somatic embryogenesis receptor-like kinase 1 369 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00176 Trre-Chr4 1220762 1224918 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00176 13 618 Receptor kinase-like Gene Family AT4G33430 70.795 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre4g00176 PK_Tyr_Ser-Thr 6.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00176 K13416 - gmx:100800522 947.962