Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00175 ATGGAACAAGTGACTTCATCTTATAAAGTTTGGTTTCTTTTTTGGGCAATTTTGGTGTTTGATTTGGTTTTTAAAGCTTCTTCTAATGTGGAAGGTGATGCACTGAATGCATTGAAGAGCAACTTGAATGATCCTAATAATGTTCTTCAAAGTTGGGATGCTACTCTTGTGAATCCCTGTACGTGGTTTCATGTTACGTGCAATGGTGATAACAGTGTTACCCGTGTTGATCTTGGAAATGCGGATCTTTCTGGTACACTGGTTACACAACTTGGTGATCTCACAAATTTGCAGTACTTGGAACTTTACAGTAATAATATAACAGGAAAAATCCCAGAAGAGCTAGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACCATTTAAGTGGTAACATACCGAGTACACTGGGGAACCTTAAAAAACTACGTTTCCTGCGTCTCAATAATAACACCTTGACTGGCCGCATTCCTGTGCCGTTGACAAGTGTTTCTACGCTGCAAGTTCTTGATCTCTCAAACAACAATTTAGAAGGGGATGTCCCAGTGAATGGTTCATTTTCATTATTTACCCCTATCAGTTATCAAAATAATCCTCACTTGATACAACCTAAAAATGCTCCTGCGCCACTTTCTCCACCCTCACCAGCTTCTTCAGGTGGTAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCTCCTGCAATTGCACTTGCGTATTGGCGAAAACGAAAACCAGCGGACCATTTCTTTGACGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTACGCGAGCTTCTGGTAGCAACAGATAACTTCAGTAACAAAAACATTCTAGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCACACTTGTAGCTGTAAAAAGACTTAAAGAGGAACGCACACAAGGCGGAGAGCTGCAATTTCAAACAGAAGTGGAAATGATCAGTATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGCATGACATCTACCGAACGTTTGCTTGTGTATCCTTACATGGCCAATGGAAGTGTAGCATCATGTTTACGAGAACGTAACGAGTCTGAACCACCTCTTGAATGGCAAATGCGGAAGAATATTGCGCTGGGATCTGCCAGAGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTGGGAGATTTCGGTTTGGCAAAGCTTATGGATTACAAAGATACCCATGTTACTACTGCTGTTCGTGGTACGATTGGGCATATAGCACCTGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTAGCACGTCTTGCCAATGATGATGATGTTATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAAGAAGTTGGAAACACTGGTAGATGCAGAGTTAAAGGGAGAGTATGATGATGATGAGGTAGAGCAGCTAATCCAAGTGGCTTTACTATGCACACAAGGGTCCCCTATGGAAAGACCAAAGATGTCCGAGGTGGTGAGAATGCTAGAAGGTGATGGTTTGGCCGAAAAATGGGAGCAATGGCAGAAAGAAGAAACGTATCGACAAGATTTTAACAACAACCACATGCATCACCCTAATGCAAATTGGATAGTAGTAGATTCAACCTCACATATTCAGCCAGATGAACTCTCAGGTCCTAGATGA 1854 0.4207 MEQVTSSYKVWFLFWAILVFDLVFKASSNVEGDALNALKSNLNDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNADLSGTLVTQLGDLTNLQYLELYSNNITGKIPEELGNLTNLVSLDLYLNHLSGNIPSTLGNLKKLRFLRLNNNTLTGRIPVPLTSVSTLQVLDLSNNNLEGDVPVNGSFSLFTPISYQNNPHLIQPKNAPAPLSPPSPASSGGSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPADHFFDVPAEEDPEVHLGQLKRFSLRELLVATDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTSTERLLVYPYMANGSVASCLRERNESEPPLEWQMRKNIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDAELKGEYDDDEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEETYRQDFNNNHMHHPNANWIVVDSTSHIQPDELSGPR 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00175 617 Gene3D Transferase(Phosphotransferase) domain 1 368 585 - -
Trre4g00175 617 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Trre4g00175 617 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00175 617 SUPERFAMILY Protein kinase-like (PK-like) 270 566 IPR011009 -
Trre4g00175 617 FunFam Somatic embryogenesis receptor kinase 1 260 367 - -
Trre4g00175 617 FunFam Somatic embryogenesis receptor kinase 1 27 213 - -
Trre4g00175 617 FunFam Somatic embryogenesis receptor-like kinase 1 368 585 - -
Trre4g00175 617 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Trre4g00175 617 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Trre4g00175 617 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 576 - -
Trre4g00175 617 Pfam Protein kinase domain 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00175 617 SUPERFAMILY L domain-like 31 194 - -
Trre4g00175 617 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Trre4g00175 617 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
Trre4g00175 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Trre4g00175 617 MobiDBLite consensus disorder prediction 205 224 - -
Trre4g00175 617 ProSiteProfiles Protein kinase domain profile. 291 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00175 Trre-Chr4 1212263 1219093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00175 13 617 Receptor kinase-like Gene Family AT4G33430 77.029 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre4g00175 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00175 K13416 - gmx:100800522 1052.74