Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00168 ATGGCAGATATGAATAATAATTACAATGTCAACCTTCCACCTGGGTTTCGTTTTGATCCCACAGATGAAGAACTTGTAGTTCATTTCCTTCATAGAAAATCAACACTCTTACCTTGCCACCCTCATGTCATCCCTGATCTTCACCTATACTCATATGATCCATGGCAACTTCATGGTAGAGCTTTGTTGGAGGGAAAAAAATGGTACTACTATAGCAGAAGGACACAAAATAGGGTAACTGACAATGGTTATTGGAAGGCAACAGGAATGGAAGAGGCAGTGATTTCTAGTACAAACAATAAGAAAGTTGGCATGAAGAAACATTTTGTGTTCCATGTTGGAGAATCCCCTGCTTCAGGTATCAAAACCAATTGGATAATGCAAGAATTTTGTCTATTAGACTCTGCTTCCTCCTCTGCCAAATCATCTAAAAGAAAATCACAACCAATGAAAGAGTATAGTAAATGGGTGATATGTCGAGTTTATGAGCAAAATGAGGATGATGATGATGGAATGGATCAGCTCTCTTATTTAGATGAAGTTTTCTTGTCATTAGATGATCTTGACGAGATAAGCTTACCAAATTATTAA 591 0.3723 MADMNNNYNVNLPPGFRFDPTDEELVVHFLHRKSTLLPCHPHVIPDLHLYSYDPWQLHGRALLEGKKWYYYSRRTQNRVTDNGYWKATGMEEAVISSTNNKKVGMKKHFVFHVGESPASGIKTNWIMQEFCLLDSASSSAKSSKRKSQPMKEYSKWVICRVYEQNEDDDDGMDQLSYLDEVFLSLDDLDEISLPNY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00168 196 SUPERFAMILY NAC domain 9 164 IPR036093 GO:0003677|GO:0006355
Trre4g00168 196 FunFam NAC domain-containing protein 104 21 167 - -
Trre4g00168 196 ProSiteProfiles NAC domain profile. 12 164 IPR003441 GO:0003677|GO:0006355
Trre4g00168 196 PANTHER NAC TRANSCRIPTION FACTOR 56 12 168 - -
Trre4g00168 196 Pfam No apical meristem (NAM) protein 13 132 IPR003441 GO:0003677|GO:0006355
Trre4g00168 196 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00168 Trre-Chr4 1164563 1165973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00168 11 183 NAC Transcription Factor Family AT1G69490 39.779 2.39e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre4g00168 NAM 8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00168 - - gmx:100170712 305.064