Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00162 ATGTCTGATGCGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATGCATTCGAAAAGTATGGCAAGCTGCTAGAGGCAAAGGTGGTGGTTGACAAGTTCTCTGGACGTTCACGTGGTTTTGGGTTTGTCACATTCGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATTGACTTGGATGGTCGAACTATTACTGTTGATAAAGCTCAGCCCCAAGGATCAAGTAGAGATGATGATGATCGTCACCGCGAACGTGGTCGTGACTCACGTGATCGCAATCGTGGGCGAGATTATGGAGGTGGTCGAGGGTCTAATGGTGGGGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCCAGGGAATGTCCTAGTGAAGGAGGAGAGAGGGGGGGAAGGTATGGTGGCAGGGAAAGTAGATATAGCGGTGGCTATGGTCCTGATAGGAATTCAGATCGCTCTTCTGGTGGTCGTGACAGGGACGGTGGTGGTCGTGACAGGGATGGTGGTGGCCGTGATAGGGATGGTGGTCGCGACAGGGATGGTGGTGGACGTGACCGGGATCGTGCTGGACCGTATGAGCGTCGTGGATCTGGAGGCTTTCGTTGA 648 0.5108 MSDADEFRCFIGGLAWSTSDRKLKDAFEKYGKLLEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSSRDDDDRHRERGRDSRDRNRGRDYGGGRGSNGGECFKCGKPGHFARECPSEGGERGGRYGGRESRYSGGYGPDRNSDRSSGGRDRDGGGRDRDGGGRDRDGGRDRDGGGRDRDRAGPYERRGSGGFR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00162 215 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Trre4g00162 215 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Trre4g00162 215 MobiDBLite consensus disorder prediction 165 208 - -
Trre4g00162 215 CDD RRM2_NsCP33_like 8 83 - -
Trre4g00162 215 SMART rrm1_1 8 81 IPR000504 GO:0003723
Trre4g00162 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Trre4g00162 215 Gene3D - 119 174 - -
Trre4g00162 215 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Trre4g00162 215 MobiDBLite consensus disorder prediction 76 215 - -
Trre4g00162 215 MobiDBLite consensus disorder prediction 86 112 - -
Trre4g00162 215 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 209 - -
Trre4g00162 215 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
Trre4g00162 215 Gene3D - 2 118 IPR012677 -
Trre4g00162 215 SUPERFAMILY Retrovirus zinc finger-like domains 115 140 IPR036875 GO:0003676|GO:0008270
Trre4g00162 215 MobiDBLite consensus disorder prediction 135 149 - -
Trre4g00162 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00162 Trre-Chr4 1123839 1125143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00162 10 84 Eukaryotic Initiation Factors Gene Family AT1G71770 36.000 2.62e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00162 - - tpra:123908224 265.003