Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00160 ATGGTTGGAAGTGTTGATGTTGTGGGCGATGATTTGAGTATTAACGGAGCAGTTGCAGTACTGCCTGATGATTTTGATGTGGCTGCCATTATCAAAGATCCTTTGCCTCCTGTAGTTGCAGAAAATGGCATTGACAAGGTAGAGGGTCAGATCAACGCAGGAAAAGAGAGAAGGGAAATAGTACTGGGGAGAAATATTCATACCACGTGTCTAGAAGTCACGGAGCCAGAAGCAGATGATGAGATTACTGGGGATCGTGATGCTCATATGGCAAGTGTGTTGGCCAGATACAGAAAATCTTTAACCGAAAGGACAAAGTATCATTTAGGCTACCCCTATAATTTGGATTTCGATTATGGTGCACTCTCTCAACTTCAGCACTTTTCCATAAACAACCTTGGAGATCCATTTATTGAAAGCAATTATGGTGTCCACTCCCGGCAGTTTGAAGTTGGCGTTTTGGATTGGTTTGCCAGATTGTGGGAATTGGAGAAAAATGAGTACTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTCCATGGCATCCTAGTTGGGAGAGAGGTGTTACCAGATGGGATTTTGTATGCCTCACGGGAGTCACATTATTCAATTTTTAAAGCTGCCCGTATGTACAGAATGGAATGTGTGAAGGTTGAGACTCTCTGTTCTGGCGAGATTGATTGTGATGATTTCAAGGCTAAACTTCTTTGCCACCAGGACAAGCCAGCAATTATAAATGTGAACATAGGTACAACTGTGAAAGGAGCTGTGGATGATCTTGATCTGGTCATAAAGAAACTTGAAGAAGCTGGATTTTCGCATGACAGGTTCTACATCCATGTTGATGGGGCTTTGTTTGGTCTCATGATGCCTTTTGTGAAACGAGCCCCAAAAGTTACTTTTAAGAAACCTATTGGCAGTGTCAGTGTTTCTGGCCACAAATTCGTGGGGTGCCCCATGCCTTGTGGTGTGCAGATAACAAGATTGGAGCATATTAATGCTCTTTCCAGGAATGTGGAATACCTTGCTTCTAGAGATGCCACAATCATGGGTAGTCGAAATGGCCATGCTCCCATATTCCTTTGGTATACCTTGAACCGGAAAGGATACAGAGGCTTTCAGAAAGAAGTACAGAGATGCTTGCGAAATGCACACTACTTCAAAGACCGCCTTATCGAGTCTGGGATTGGTGCAATGCTTAATGAGCTTAGCAGCACGGTTGTATTTGAGCGACCACATGATGAGGAATTTATACGCAAGTGGCAGTTAGCATGCAAGGGGAACATCGCTCATGTGGTGGTGATGCCAAACGTCACTATTGAGAAGCTTGATGATTTTCTAAACGAGCTTGTGCAGAAGCGTGCTACCTGGTTCGAAGATGAGAAGTGTCAACCATATTGTATAGCATCAGATGTAGGTGAAAACAGTTGCCTATGTGCACTGCATAAGTAA 1458 0.4362 MVGSVDVVGDDLSINGAVAVLPDDFDVAAIIKDPLPPVVAENGIDKVEGQINAGKERREIVLGRNIHTTCLEVTEPEADDEITGDRDAHMASVLARYRKSLTERTKYHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSIFKAARMYRMECVKVETLCSGEIDCDDFKAKLLCHQDKPAIINVNIGTTVKGAVDDLDLVIKKLEEAGFSHDRFYIHVDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQRCLRNAHYFKDRLIESGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNVTIEKLDDFLNELVQKRATWFEDEKCQPYCIASDVGENSCLCALHK 485
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00160 485 FunFam Serine decarboxylase 1 124 367 - -
Trre4g00160 485 Pfam Pyridoxal-dependent decarboxylase conserved domain 195 404 IPR002129 GO:0016830|GO:0019752|GO:0030170
Trre4g00160 485 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 309 330 IPR021115 GO:0016831
Trre4g00160 485 SUPERFAMILY PLP-dependent transferases 104 454 IPR015424 -
Trre4g00160 485 Gene3D Aspartate Aminotransferase, domain 1 368 456 IPR015422 GO:0003824
Trre4g00160 485 Gene3D - 123 367 IPR015421 GO:0003824
Trre4g00160 485 PANTHER - 51 485 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre4g00160 Trre-Chr4 1111281 1116313 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00160 208 391 Calmodulin-binding Proteins AT1G65960 27.461 3.96e-10 59.7