Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00152 ATGAAGGAGAATTTATGCAATGTAGTACAAGGTTTGAAGCCAACGTTGTTAATGGTTATGGTGCAAATAACATTTGCTGGTGTTAATGTTCTCTACAAACTTGCTGTTAACGATGGCATGAACTTAAGGATTGTTGTTGCCTACCGTTTTATATTTGCAACTGCTTTCATTGCTCCACTTGCTTTTGTTCTTGAAAGGAAGAAGAGGACAAAGATGACTTGGATGATACTGTTTCAGACTTTTCTCTGCGGTTTGTTTGGAGGATCATTAGCGCAAAACTTCTACTTAGAAGCCATGGCTTTAACTTCAGTAACATTTGCATCCGCAATGGCCAACCTTATACCAGCCATAACCTTTATTTTGGCCGTTTCCTTAGGGATGGAAAAATTAAATTTGAGAACGAAAGCAGGGAAAGCAAAGATAATGGGTACACTGACTGGAATTAGTGGGGCAATGGTATTGACATTTGTTAAAGGTATTGAAATCAAGATTGGTTCATCTCACTTAAACCTGTTGCATCACAAAAACGGCGTCGGATTGAACCCACATGCTACTATATCTAAAGGTAGCACGGTTTTGGGCTCTCTGTGTGCCTTGGCTAGTGCCATCTCTTATGCATCATGGCTTATTATTAATGCAAAGATGAGTGAAAAGTATCCAACTCATTACTCAAGCACTGCATTGACATCTTTTTGGGCGTCATTAGTTTCCATTGTGTTTGCTCTCTGCTTTGAGAGGGATTTTAGTCAATGGAGATTGGGTTGGAATATTAGGCTACTAACCGTTGCTTATGCGGGTATAGTGGTTTCAGGAGCAATGATAGTTGTAATTTCATGGGTAGTACATATGAGAGGTCCATTGTTTGCTTCTGTTTTTAGCCCTCTAATGCTTGTCATGGTGGCCTTGGCTAGTGTTACTATGTTGAATGAGAAGCTATACCTTGGAACCATTATTGGAGCAGTTTTGATTGTATGTGGCTTGTATACGGTTGTATGGGGTAAGAGTAAAGAGAAGAAGAAAAATAATCAATTAGTGCCATCACAAAGCACCAATGAATTTGGGACAGTTGAAATAGTTGTGAGGCCTGTAGTAGAAGATAAAAGCAACCATAATAATAATAGAAAGGGTGAATCTCAAGGTAATAATACTTTACAAGTACATGAACATGAACATGAACATGAAGAGCAAAGTCATGAACATGTACAAGATCAAGAAAAAGGAGAAGAAATTGCCCATCATGACTAA 1245 0.3855 MKENLCNVVQGLKPTLLMVMVQITFAGVNVLYKLAVNDGMNLRIVVAYRFIFATAFIAPLAFVLERKKRTKMTWMILFQTFLCGLFGGSLAQNFYLEAMALTSVTFASAMANLIPAITFILAVSLGMEKLNLRTKAGKAKIMGTLTGISGAMVLTFVKGIEIKIGSSHLNLLHHKNGVGLNPHATISKGSTVLGSLCALASAISYASWLIINAKMSEKYPTHYSSTALTSFWASLVSIVFALCFERDFSQWRLGWNIRLLTVAYAGIVVSGAMIVVISWVVHMRGPLFASVFSPLMLVMVALASVTMLNEKLYLGTIIGAVLIVCGLYTVVWGKSKEKKKNNQLVPSQSTNEFGTVEIVVRPVVEDKSNHNNNRKGESQGNNTLQVHEHEHEHEEQSHEHVQDQEKGEEIAHHD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00152 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 337 - -
Trre4g00152 414 MobiDBLite consensus disorder prediction 384 414 - -
Trre4g00152 414 MobiDBLite consensus disorder prediction 366 414 - -
Trre4g00152 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 143 - -
Trre4g00152 414 PANTHER WAT1-RELATED PROTEIN 14 343 IPR030184 GO:0016020|GO:0022857
Trre4g00152 414 Pfam EamA-like transporter family 14 153 IPR000620 GO:0016020
Trre4g00152 414 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00152 Trre-Chr4 1068090 1072542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00152 12 352 Nodulin-like Gene Family AT1G25270 43.402 6.31e-93 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00152 - - tpra:123910665 620.157