Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00148 ATGAAAGGGGTGTGGAATAGAATGCATGGTTTGAAACCAGTGATGCTTATGGTTTTGGTACAAATTGCATATGCTGCAGTTAATGTTCTTTACAAGCTTGCCATCAATGATGGAATGACCGTTAAAGTTGCTACTGCTTATCGTCTTGCTTTTGGTTCTGCTTTTACTGTTCCTCTCGCTCTCATTTCTGAAAGGAAGAAGAGGCCAAAGTTGACTTGGAGAGTACTATTCATGGCATTTCTTTGTGGCTTGTTTGGGGGAAGTTTATTTCAAAATCTTTTCTATGAGGCCTTGGCTTTAACATCGGCAACTTTTGCATCAGCCATCTACAACCTTATTCCAGCCATAACCTTTATCATGGCCATCTCCTGCGGATTTGAAAAATTAAATTTGAGGGCAGCATCTGGAAAAGCTAAGGTATTAGGAACAGTAATTGGAATTGGTGGAGCAATGATGTTGATTTTTCTCAAAGGTGTAGAAATTAATATCTGGCCCTTCCACATCAACCTTTTGCATCCACCTCAGCACCAAAATGGCCACGTGGCATCACTAAATGTTAATTCTAGTAGTAAATGGTTGGGTGTTCTGTGTGCAGTAGCAAGCTGCTTCTCTTTTTCATTGTGGCTAATAATTCAGGCTAAAATGAGCAAAGAATATCCAAGCCATTACTCAAGTACAGCTTTAATGTCTACAATGGGTGCAATACAAGCCACTGCTTTTGGTCTTTGTGTTGAAAGGGATTGGAGCCAATGGAAGTTGGGTTGGAATATTAGGTTATTAGCTGTGGCTTACTCGGGAATCGTTGCCTCTGGATTAGTGGTGATTGTGACTTCATGGTGCATAAAGATGAGGGGCCCACTATTTGCGTCTGTCTTCAACCCTCTAATGCTTTTGTTTGTGACGATTGTCGCTTCTATGACGTTGGATGAAAATTTATATTTAGGAAGCTTGATTGGAGCAGTGTTGATTGTGTGTGGTTTGTACATGGTTCTTTGGGGTAAGAGTAAAGAAATGAAAAAGATTGCTCAATTGGCTACATCAAAAATTGCCCAAGAAACTGAAGATATAGAAGTTGTTGTTATGCCCACACTAGAAATAGTAGATCATGATAAAATACATGTCAACAATAATAATCACAAAGAAGTTGATAAAGATCATGTCGATTATTTATCAAAAAATAGAGAAATTAGTAGTAGTATTGGTGATGATCAAGAGATAGAGAAATCTTCAACTAATTAA 1239 0.3834 MKGVWNRMHGLKPVMLMVLVQIAYAAVNVLYKLAINDGMTVKVATAYRLAFGSAFTVPLALISERKKRPKLTWRVLFMAFLCGLFGGSLFQNLFYEALALTSATFASAIYNLIPAITFIMAISCGFEKLNLRAASGKAKVLGTVIGIGGAMMLIFLKGVEINIWPFHINLLHPPQHQNGHVASLNVNSSSKWLGVLCAVASCFSFSLWLIIQAKMSKEYPSHYSSTALMSTMGAIQATAFGLCVERDWSQWKLGWNIRLLAVAYSGIVASGLVVIVTSWCIKMRGPLFASVFNPLMLLFVTIVASMTLDENLYLGSLIGAVLIVCGLYMVLWGKSKEMKKIAQLATSKIAQETEDIEVVVMPTLEIVDHDKIHVNNNNHKEVDKDHVDYLSKNREISSSIGDDQEIEKSSTN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00148 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Trre4g00148 412 PANTHER WAT1-RELATED PROTEIN 12 346 IPR030184 GO:0016020|GO:0022857
Trre4g00148 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 336 - -
Trre4g00148 412 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020
Trre4g00148 412 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00148 Trre-Chr4 1025564 1028090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00148 11 396 Nodulin-like Gene Family AT1G25270 40.568 4.25e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00148 - - gmx:100809587 620.542