Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00132 ATGCCAAAGTCTAAGAGAAACAAACAAGTTACACTTTCAAAGACAACGAAAAAAGGAAGAGGTCACAAAGAATTGATAGTGAATGCAATAAGAGATGCAGCTGAAAATTACAATTCAGTTTATGTATTTTCTTTTGAGAACATGAGGAACCAAAAATTGAAAGAGTTTAGAGAACAATTACAAAAAAGTAGTAGGTTTTTTCTTGGATCCAACAAAGTAATGCAAGTTGCTCTTGGTCGTTCTCCTTCTGATGAAATCAAAACCAATCTTCATAAGGTTTCAAAGCTATTGCGTGGAAATGCTGGGATGGTTTTTACGAATCTTTCTAGAGAAGAAATTGAAAGGCTGTTTAATGAATTTGAGGGATATGACTTTGCAAGAACAGGAAGCATTGCCACAGAAAAGGTGGAACTCAAGGAGGGTCCTTTAGAGCATTTCACACACGAGATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGATTAAATAAAGGAGTTGTGGAGCTTGTTTCTGACTATGTTGTTTGTGAGGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGCATCCTGCGTTTGATGGGAGTCATGATGGCTACATTTCGACTACACCTGGTTTGCAGGTGGAGTTCTGATTATTTTGAACTCTTAATTGACGGGCCTGGTGATTCGGATGTTGAATGA 684 0.3904 MPKSKRNKQVTLSKTTKKGRGHKELIVNAIRDAAENYNSVYVFSFENMRNQKLKEFREQLQKSSRFFLGSNKVMQVALGRSPSDEIKTNLHKVSKLLRGNAGMVFTNLSREEIERLFNEFEGYDFARTGSIATEKVELKEGPLEHFTHEMEPFLRKQGMPVRLNKGVVELVSDYVVCEEGKPLSPEASRILRLMGVMMATFRLHLVCRWSSDYFELLIDGPGDSDVE 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00132 227 SUPERFAMILY Ribosomal protein L10-like 20 144 IPR043141 -
Trre4g00132 227 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 218 - -
Trre4g00132 227 Gene3D - 125 198 IPR043164 -
Trre4g00132 227 Pfam Ribosomal protein L10 20 120 IPR001790 -
Trre4g00132 227 FunFam Ribosome assembly factor mrt4 125 198 - -
Trre4g00132 227 CDD Ribosomal_P0_like 22 184 IPR033867 GO:0000027
Trre4g00132 227 Gene3D - 30 211 IPR043141 -
Trre4g00132 227 Pfam Insertion domain in 60S ribosomal protein L10P 126 196 IPR040637 -
Trre4g00132 227 FunFam Ribosome assembly factor mrt4 29 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00132 Trre-Chr4 914022 916134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00132 35 196 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 21.605 4.18e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00132 K14815 - gmx:100500064 384.03