Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00131 ATGCCAAAGTCTAAGAGAAACAAACAAGTTACACTTTCAAAGACAACGAAAAAAGGAAGAGGTCACAAAGAATTGATAGTGAATGCAATAAGAGATGCAGCTGAAAATTACAATTCAGTTTATGTATTTTCTTTTGAGAACATGAGGAACCAAAAATTGAAAGAGTTTAGAGAACAATTACAAAAAAGTAGTAGGTTTTTTCTTGGATCCAACAAAGTAATGCAAGTTGCTCTTGGTCGTTCTCCTTCTGATGAAATCAAAACCAATCTTCATAAGCTATTGCGTGGAAATGCTGGGATGGTTTTTACGAATCTTTCTAGAGAAGAAATTGAAAGGCTGTTTAATGAATTTGAGGGATATGACTTTGCAAGAACAGGAAGCATTGCCACAGAAAAGGTGGAACTCAAGGAGGGTCCTTTAGAGCATTTCACACACGAGATGGAACCTTTTCTCCGGAAGCAAGGCATGCCTGTTCGATTAAATAAAGGAGTTGTGGAGCTTGTTTCTGACTATGTTGTTTGTGAGGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGCATCCTGCGTTTGATGGGAGTCATGATGGCTACATTTCGACTACACCTGGTTTGCAGGTGGAGTTCTGATTATTTTGAACTCTTAATTGACGGGCCTGGTGATTCGGATGTTGAATGA 675 0.3911 MPKSKRNKQVTLSKTTKKGRGHKELIVNAIRDAAENYNSVYVFSFENMRNQKLKEFREQLQKSSRFFLGSNKVMQVALGRSPSDEIKTNLHKLLRGNAGMVFTNLSREEIERLFNEFEGYDFARTGSIATEKVELKEGPLEHFTHEMEPFLRKQGMPVRLNKGVVELVSDYVVCEEGKPLSPEASRILRLMGVMMATFRLHLVCRWSSDYFELLIDGPGDSDVE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00131 224 Pfam Insertion domain in 60S ribosomal protein L10P 123 193 IPR040637 -
Trre4g00131 224 Gene3D - 30 208 IPR043141 -
Trre4g00131 224 Gene3D - 122 195 IPR043164 -
Trre4g00131 224 FunFam Ribosome assembly factor mrt4 29 128 - -
Trre4g00131 224 CDD Ribosomal_P0_like 22 181 IPR033867 GO:0000027
Trre4g00131 224 Pfam Ribosomal protein L10 20 117 IPR001790 -
Trre4g00131 224 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 215 - -
Trre4g00131 224 FunFam Ribosome assembly factor mrt4 122 195 - -
Trre4g00131 224 SUPERFAMILY Ribosomal protein L10-like 20 141 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00131 Trre-Chr4 914022 916134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00131 35 193 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 22.222 3.92e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00131 K14815 - gmx:100500064 373.629