Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00111 ATGTCTCTCACAGGCCGTCCTCGTGTTGTTGTCAACGGTGTTCGAAGACTGAGAACCTTCCATTATTTCTGGTGTCTCAATTGCCAACGTACCGTCAGAATACCGTCAACAAATACTATAACAAATGGCTCTTTTTGCCCATATTGCTTCCATCAATTACGTTATGAACTTGATATATCAAGGCCAAGGCTTCTCATGAACGTGACTAACAACAACATGGAGCCTCCTCCTTCTACTAATCAGTTAATGGGTAACTTAGCTTTCATTCTTGATCCATCTCTCAGGAGACAAGACCAAAACAACATAACACCACAATGGGAAACAGAACATGAAGATGATCAAAATCAAAATCCACAAGCATGGATTACACTCCGATTCGTAAGACCAACTCGTCCACCGAGGCCTATTGCACCACCGCCACAGCCACAAAACTTGGCAACCCAACCCAATGACAATGAACCCCCTTCGTTAGACGAGTTCTTTGATGGGATGATTCACAACAACAGCAGACCAGGGCCGCCTCCTGCGTCACCTTCGGCCATTGAAGCATTGCCAATGGTGAAAGTGACAGAATCCCATTTGACAAGTGACCCGAATTGTCCAATATGCAAAGATGAGTTTGAGGTTGATGTGGAAGTGAGAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTATCCCTTGGCTTCACATGCACAACACTTGCCCCGTATGCCGCCATGAGCTACAAGGGATCGATAATAGTAATGCCAGTTACTACTTTTCCCATAATGAGGATGAGCAACATGGGTTCATTGGGTTTGAGGAATTTACAAGCAGCCTTAACTGGATCTGGAGCCAACTTGCTTTGTTTAGACCTATTCGTGCAGTTCTAGATTGGACGCGGTCCTATTTTGAATTCCATGCACATGCTCATAGTAGAAGTAGCTCTTGGTGGCGGGCATTGTTCATTTCGTAG 963 0.4465 MSLTGRPRVVVNGVRRLRTFHYFWCLNCQRTVRIPSTNTITNGSFCPYCFHQLRYELDISRPRLLMNVTNNNMEPPPSTNQLMGNLAFILDPSLRRQDQNNITPQWETEHEDDQNQNPQAWITLRFVRPTRPPRPIAPPPQPQNLATQPNDNEPPSLDEFFDGMIHNNSRPGPPPASPSAIEALPMVKVTESHLTSDPNCPICKDEFEVDVEVRELPCKHFYHSDCIIPWLHMHNTCPVCRHELQGIDNSNASYYFSHNEDEQHGFIGFEEFTSSLNWIWSQLALFRPIRAVLDWTRSYFEFHAHAHSRSSSWWRALFIS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00111 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 246 IPR013083 -
Trre4g00111 320 SUPERFAMILY RING/U-box 180 246 - -
Trre4g00111 320 CDD RING-H2_RNF126-like 199 241 - -
Trre4g00111 320 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Trre4g00111 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 244 - -
Trre4g00111 320 SMART ring_2 200 240 IPR001841 -
Trre4g00111 320 MobiDBLite consensus disorder prediction 131 145 - -
Trre4g00111 320 MobiDBLite consensus disorder prediction 129 159 - -
Trre4g00111 320 Pfam Ring finger domain 199 241 IPR001841 -
Trre4g00111 320 FunFam E3 ubiquitin-protein ligase RING1-like 163 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00111 Trre-Chr4 802170 803296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00111 1 302 C3H Transcription Factor Family AT1G68180 32.459 8.27e-43 145