Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00097 ATGTACATTTTTGGAGTTAACTTTGATACATCATCGTCTAATGGGGCATTGCTTCAAGGACAATCATCAATGATCAACAAAAACAGTGATACTAATATTGTTGGTAGTTCTAGTTTTGATCATTTTTCTAGTGTTGCTTATGGTTCGTTGCCAAATACTACGTCTACTCCAGTTACAAAAGACTTTAAGAAGAGAGATTCTGATAATTTGGAATTCGGTCAAAAAGGGGTGACAATGAAGAAAAAAAGAATCATAAAATCTGAACAATATCAACGAACTTATTCTTGCAAGTTTTGCAAGAAACATTTTTCTTCTCCACATGCGCTGGGAGGACATCAAAATGCTCATAAGAAAGAGCGTGCTCGAGAAAAGCATTTTCAAGAGATTAAGAATATTTTTGGGACCCCTCATTATCCCTTATCTTACTATAATTGTCCTAGTGTATCTACACCCTCTCCTTTTTCTTACTATAATAATCATAGACTATCTACACCCCTTTATCATGGATATGGAACACCCCTTTATCATGGATATGGATCCTATACTAGAGCACTTGAAATGCAGTTGGAAGCCATGACTCTAGAGCCTGCTCCTATGTGGACACCAAAGCAAGAGATGAAAAACTTTTCTTCTAATGATGAAGTGAAGATCGAGGATCTTAATGCAAATAATGGATACATTGCAACTCCAACTTGGTGGAGCAATATGAATTTTGTTGGAGAGTCTTCAACAAATGTGGCTACAAAGCCAAATGTGGTCGTCAAAGAAGAAATATCGAATTTAACTGAGCTTGATTTGTCCCTTAAACTTTGA 813 0.3604 MYIFGVNFDTSSSNGALLQGQSSMINKNSDTNIVGSSSFDHFSSVAYGSLPNTTSTPVTKDFKKRDSDNLEFGQKGVTMKKKRIIKSEQYQRTYSCKFCKKHFSSPHALGGHQNAHKKERAREKHFQEIKNIFGTPHYPLSYYNCPSVSTPSPFSYYNNHRLSTPLYHGYGTPLYHGYGSYTRALEMQLEAMTLEPAPMWTPKQEMKNFSSNDEVKIEDLNANNGYIATPTWWSNMNFVGESSTNVATKPNVVVKEEISNLTELDLSLKL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00097 270 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Trre4g00097 270 SUPERFAMILY beta-beta-alpha zinc fingers 91 121 IPR036236 -
Trre4g00097 270 Gene3D Classic Zinc Finger 70 135 - -
Trre4g00097 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Trre4g00097 270 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 62 270 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00097 Trre-Chr4 721760 723834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00097 86 142 C2H2 Transcription Factor Family AT1G24625 45.614 1.70e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre4g00097 None None None