Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00096 ATGGGGAGAAGAAACAACGGCGGCGGTGGTGGTGGCGGCGGAGGGGGAAGGTCTCTGCAATTCGCTCTTCGCCGACGAGTTGAATCCTGCAAATCAAAGTACACAACCCCCGAAGAAATCGTCGATCATCTTCGCTCAAATTACCCTGATTACCACCGAACTAAGAGCCAACAACTCCTTCGATTTGTTAACGATGCTCTTCAATCTTCCAATAATACTCCCTCACGGAACCCTAACCAGAACAACAATGCTGCCGTCGACGATGACGACGACGATGATGAGGAGGAGTGTCGAAATTCTTCTCGAAAGAGACGTAAGGATGTTACCGATGAATCTGAAGCTCGATTGCAGAAAATGGAAGCTCTTCATATCAAAACAAGGATGAGTAAGGAGGTTCCATCATCTTCCTCCGAACCTCCTTCCGATAGCGGTGATGACGGTGCAGTTTCGACTTCAGAGGACGCGATTTATAGTGAGAAAGTTGAACCTGCTTTTGATTTGATGAAAGACATGCTGCGTAATTCGTATACAGGAGCGAAAACGGCACCTGTGGCGGAGGAAAAGAACGTTGAATTGGATATGGGGAATTCAAGTAAAGATACTATTACTGTTAATAAGAATGGTGGTGAATCGAAGTTGTATCGGACTACAAAGATACGACTGAAGGGTTCGGGTTCAGGTTCTAATGTTGCCGGTGGTGGTGTTGCTGATGTTGAGATGAAAGGGAAGGAAGGGCCAATGTTTAAAGATTTGGGCGGGATGAAGGATATATTGGAAGAATTGATGATGGATATTGTGTCATTGTGCAATCCTCAATTGCCTAGACATTTGGGAGTGAAACCAGTGACTGGAATTTTGTTACATGGACCACCTGGTTGTGGAAAAACTAGACTTGCTCATGCTATAGCGAATGAAACCGGTCTTCCCTTTCATCATATTTCGGCTACCGAGGTGGTTTCTGGAGTCTCAGGTGCATCCGAAGAATATATTAGAGAGCTTTTTGACAAAGCAAAAAGGACTGCTCCATCGATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGTGAAATGGAGAAACGAATTGTGACCCAGTTAATGACTTCCATGGATGAGCCGGAGAGTTCTGATGAACCTCGTGGCTATGTTCTTGTAATTGGAGCCACAAATAGGCCTGATTCACTTGACCCTGCTCTTAGACGGCCTGGTAGGTTTGATCGTGAGTTTTTTGTTGGCGTTCCTGATGAATCTGCCAGGGAGGAGATCCTTTCAGTGCTTACTCGCAATCTTAAACTTGATGGTTCATTTGATCTGCGCAAAATAGCCAGGTCTACGCCAGGATTTGTTGGTGCTGATTTGGCAGCTCTGGCTAACAAAGCTGGTAATCTGGCAATGAAGAGGATAATTGATGAAAGGAAACGTGAATTATCTCAAGATCTCATGAGTGAGAATACCAAAGGCTGGTGGAGAGAACCTTGGTTGCCTGAAGAAATAAATAAGCTTGCTATCAAAATGTCTGATTTTGAGGAAGCAGCCAAAATGGTGCAACCTTCAGCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTCAAATGGGAAGATGTTGGTGGGCTTGATATTATAAGGCATGAGTTTGATCGCTATATTGTAAGGCGTATAAAACATCCTGAGTATTATGAGGGAATTGGGATGAATCTTGAATCTGGATTTTTGCTTTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAGGCTGTTGCCAATGAGGCTGGAGCTAATTTCATTCATATTAAGGGACCCGAGCTTCTAAATAAATATGTTGGGGAAAGTGAGCTTGCAGTGCGGACATTGTTTAATCGTGCAAGGACTTGTGCACCATGTGTACTATTTTTTGATGAGGTTGATGCTCTGACTACTGAACGTGGTAAAGAAGGTGGATGGGTTATTGAAAGACTATTGAACCAGTTGCTTATCGAGTTAGATGGCGCTGAGCAGCGGAGAGGTGTTTTTGTGATTGGTGCAACAAATAGGCCTGAGGTGATGGACCGTGCTCTCTTACGGCCTGGCAGGTTTGGTAAACTGCTTTATGTTCCTCTTCCAAGTCCAGACGACCGTGTTTTGATATTGAAAGCTCTTGCAAGAAATAAACATTTTGATTCTAGTATGGATTTGAGTGCTATTGGAAGAATGGAAGCATGTGAAAACCTTAGTGGTGCTGATCTTGCAGAATTGATGAACGAAGCAGTAATGGCTGCTCTTGATGAGAAGTTGGCCTCAATTGAGACAACCTGCGAATCATTTACCATTAGGACGAGTCATTTTGAAGTAGCACTAAGTAAAGTTTCTCCATCTGTGTCGGACAAGCAAAGGCAGTACTATGAGCGTTTGTCAAGAAGCCTTAAAGCGGCATGA 2433 0.4373 MGRRNNGGGGGGGGGGRSLQFALRRRVESCKSKYTTPEEIVDHLRSNYPDYHRTKSQQLLRFVNDALQSSNNTPSRNPNQNNNAAVDDDDDDDEEECRNSSRKRRKDVTDESEARLQKMEALHIKTRMSKEVPSSSSEPPSDSGDDGAVSTSEDAIYSEKVEPAFDLMKDMLRNSYTGAKTAPVAEEKNVELDMGNSSKDTITVNKNGGESKLYRTTKIRLKGSGSGSNVAGGGVADVEMKGKEGPMFKDLGGMKDILEELMMDIVSLCNPQLPRHLGVKPVTGILLHGPPGCGKTRLAHAIANETGLPFHHISATEVVSGVSGASEEYIRELFDKAKRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDEPESSDEPRGYVLVIGATNRPDSLDPALRRPGRFDREFFVGVPDESAREEILSVLTRNLKLDGSFDLRKIARSTPGFVGADLAALANKAGNLAMKRIIDERKRELSQDLMSENTKGWWREPWLPEEINKLAIKMSDFEEAAKMVQPSARREGFSSIPNVKWEDVGGLDIIRHEFDRYIVRRIKHPEYYEGIGMNLESGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFNRARTCAPCVLFFDEVDALTTERGKEGGWVIERLLNQLLIELDGAEQRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSPDDRVLILKALARNKHFDSSMDLSAIGRMEACENLSGADLAELMNEAVMAALDEKLASIETTCESFTIRTSHFEVALSKVSPSVSDKQRQYYERLSRSLKAA 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00096 810 FunFam ATPase, AAA family protein 534 713 - -
Trre4g00096 810 PANTHER AAA-FAMILY ATPASE 83 808 - -
Trre4g00096 810 Pfam ATPase family associated with various cellular activities (AAA) 577 705 IPR003959 GO:0005524|GO:0016887
Trre4g00096 810 Pfam ATPase family associated with various cellular activities (AAA) 285 418 IPR003959 GO:0005524|GO:0016887
Trre4g00096 810 Gene3D - 420 528 - -
Trre4g00096 810 MobiDBLite consensus disorder prediction 129 148 - -
Trre4g00096 810 Gene3D - 707 786 - -
Trre4g00096 810 MobiDBLite consensus disorder prediction 68 157 - -
Trre4g00096 810 SMART AAA_5 281 421 IPR003593 GO:0016887
Trre4g00096 810 SMART AAA_5 572 708 IPR003593 GO:0016887
Trre4g00096 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 524 IPR027417 -
Trre4g00096 810 FunFam Ribosome biogenesis ATPase RIX7 236 418 - -
Trre4g00096 810 Gene3D - 235 418 IPR027417 -
Trre4g00096 810 ProSitePatterns AAA-protein family signature. 676 694 IPR003960 GO:0005524|GO:0016887
Trre4g00096 810 Gene3D - 534 801 IPR027417 -
Trre4g00096 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 534 805 IPR027417 -
Trre4g00096 810 MobiDBLite consensus disorder prediction 68 84 - -
Trre4g00096 810 FunFam Cell division control protein 48 homolog C 420 528 - -
Trre4g00096 810 Pfam AAA+ lid domain 442 477 IPR041569 -
Trre4g00096 810 Pfam AAA+ lid domain 730 769 IPR041569 -
Trre4g00096 810 ProSitePatterns AAA-protein family signature. 389 407 IPR003960 GO:0005524|GO:0016887
Trre4g00096 810 MobiDBLite consensus disorder prediction 96 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00096 Trre-Chr4 714368 719542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00096 277 805 Calmodulin-binding Proteins AT3G56690 38.527 1.31e-121 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00096 K14571 - gmx:100809594 1078.54