Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00094 ATGTATTTAAAATTACAAAAATACCTAACCCCCTCCAACCAAAATTTCATTCCTCTTCTAACTCTCGCTCTCACCGGTGTGCCTCTCATCTCTCGCGACGAGAACCTCTCCGCCCCGCAACCGCTTTGCTACTGTAGCGCCACCGTCCACCATCGACCTTCTCTCGTCTCTCCGACGAACCTCTTTCTCGCAGCCAATTGTTCTCCATATATAATGTCTGAAGAGGTTGGATCCATGTTGGCAGTTTATGATGATCCCTCTGACCAACATTCACTCTCTTTCGGCGGCGATACAAGCAGCACCGAGGAATCCCCTGGTGAAACCAGACTCTCCTTGCAACCAACTAATGATCACATTCCATACATTGGTCAAAGATTTTCCACCCATGATGAAGCTTATGAATTCTATAGTGATTTTGCCAAGAGTTGCGGCTTCTCAATTAGACGTCACCGTACAGAAGGAAAAGATGGTGTTGGCAAAGGACTTACTAGACGCTACTTTGTTTGTCATCGTGCTGGCAACACTCCTGCTAAATCAACAACCGAAACTAAACCTCAAAGAAATAGAAAATCTTCTCGCTGTGGTTGTCAGGCTTATATGCGGATAAGCAAAACGACGGAATTTGGACCTCCAGAATGGCGTGTCACTGGTTTTGCTAACCACCATAATCATGAACTTTTGGAACCAAACCAAGTTCGTTTCCTTCCTGCATATAGAACTATATCAGATCTTGACAAAAACCGAATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTCATTTTCTTGGGCTATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAAACTATATTAACCGACCAAAACATTTGTCTCAAAGAAGCACTATCTGCAGAAATGTCGATAACAAAACATGCTTTCTGCATATGGATGATAGTTGCAAAGTTTCCATCTTGGTTCAATGCTGTTCTAGGGGAACGCTACAATGAGTGGAAGGCTGAATTTTATAGACTTTATAATCTTGAATCAGTTGAGGATTTTGAACTAGGGTGGAGGGAAATGGTATGTTCTTTTGGGCTGCATTCCAATCGGCACATGGTTAATTTATATAGCTCGCGCTCACTTTGGGCATTGCCATATTTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGCCAGTCAAAGTCAATTAATGCCTTCATTCAACGGTTTCTAAGTGCACAGACACGACTTGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTCTGCCTCAAAACAGGAGCCCCCATGGAATCACATGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCCAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGCGACATCACACAAAAGTTGAAGGAGGTCGCAAAGTTTATTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTGAGAGTTCTTTCAACAGGAAATTGTTTTCAGATCCCAGATGCATATCTTCCCATTCGATGGCGTCGTATCAGCGTGCCTTCTTCTAAGCTTCTTCAAAATGCACCCAACGATCATGCCGAAAGAGTTAAGTTATTCCAAAATATGGTTTCATCTCTAATTACAGAATCTACTAAGTCTAAAGAGCGATTAGATATTGCAACAGAACAAGTTTCCATTCTTCTGTCTCGCATAAGAGAGCAACCAATTTCATTACAATGTGCCAGGGATATTTCTACCATTAATAGGAATCTATGA 1893 0.4205 MYLKLQKYLTPSNQNFIPLLTLALTGVPLISRDENLSAPQPLCYCSATVHHRPSLVSPTNLFLAANCSPYIMSEEVGSMLAVYDDPSDQHSLSFGGDTSSTEESPGETRLSLQPTNDHIPYIGQRFSTHDEAYEFYSDFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPAKSTTETKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDLDKNRILMFAKTGISVHQMMRLMELEKSFSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMSITKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHMVNLYSSRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRKVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDAYLPIRWRRISVPSSKLLQNAPNDHAERVKLFQNMVSSLITESTKSKERLDIATEQVSILLSRIREQPISLQCARDISTINRNL 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00094 630 ProSiteProfiles Zinc finger SWIM-type profile. 504 540 IPR007527 GO:0008270
Trre4g00094 630 Pfam MULE transposase domain 267 321 IPR018289 -
Trre4g00094 630 Pfam SWIM zinc finger 512 538 IPR007527 GO:0008270
Trre4g00094 630 Pfam FAR1 DNA-binding domain 134 227 IPR004330 -
Trre4g00094 630 MobiDBLite consensus disorder prediction 91 115 - -
Trre4g00094 630 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 114 604 IPR031052 GO:0006355
Trre4g00094 630 SMART 26again6 515 542 IPR006564 GO:0008270
Trre4g00094 630 MobiDBLite consensus disorder prediction 90 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00094 Trre-Chr4 697661 701582 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g00094 FAR1 7.8e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00094 - - mtr:112419135 703.36